PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30933
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 105aa    MW: 11384.9 Da    PI: 10.4535
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30933genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000271232323
              ETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
              C +C++ F ++  L  H++ H
  EMT30933 12 CVYCDRKFITSQALGGHQNAH 32
              ******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-10450No hitNo description
PROSITE profilePS5015710.5541037IPR007087Zinc finger, C2H2
PROSITE patternPS0002801234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MAPEPRVGFF LCVYCDRKFI TSQALGGHQN AHKHERRVAK RRQQTAAAGE GLPAAARDER  60
LPWPRYDTGL VSAAGTAAAG GKAHKHGRSW SVHGAVDDVD LSLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542RRVAKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753403e-34AK375340.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091J11.
GenBankEU9537753e-34EU953775.1 Zea mays clone 1445807 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169302.15e-73zinc finger protein 2-like
TrEMBLA0A453J9R01e-71A0A453J9R0_AEGTS; Uncharacterized protein
STRINGEMT309336e-72(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.15e-13zinc-finger protein 1