PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30739
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 425aa    MW: 48662.6 Da    PI: 9.2713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30739genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.2e-17107191797
               .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
        B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
               p d ++++ +++p +f+ ++ g k   s t+ le ++g++++v++  + ++++++l++GW+ Fv+an + e D+++F++ g+ +f  +v vf
  EMT30739 107 PMDRNSRHSMIIPESFV-NYfGWK--LSGTIELEAPNGNVYDVRV--TERRNKTFLRSGWEAFVDANYIVETDSLMFRYRGNCRF--NVLVF 191
               6688999**********.552544..667****************..999999**************************999999..77766 PP

2B338.81.6e-123354221099
               HHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EEEEE-S CS
        B3  10 vlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvvkvfrk 99 
               + +++ l++  k+++++  k  +s+ l+++ e   ++W   l    ++++  +++GW +F+++n+L+egD+++F+l+++    ++++v ++r+
  EMT30739 335 NVRRS-LTFATKYCDTYLRK--GSRSLVFQAEGKiQQWHGGL--HVTDRALRIRGGWTSFARDNNLREGDICLFELMKNkvGLKKMMVYIIRR 422
               44444.88888888888444..5668999997777*******..999999*************************996645666788888876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2198196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-20100196IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.183101194IPR003340B3 DNA binding domain
CDDcd100171.84E-17102191No hitNo description
SMARTSM010191.7E-11104194IPR003340B3 DNA binding domain
PfamPF023621.5E-15107191IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-16321425IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-17321423IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.025325423IPR003340B3 DNA binding domain
CDDcd100171.35E-11325421No hitNo description
SMARTSM010190.0011327423IPR003340B3 DNA binding domain
PfamPF023628.9E-10338422IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTLELYVADV VDDHKMKMNA MRLKMDAMRL KKIRKYAIDN EAWYHYAVGS IATLVAIFIS  60
FVVMRDEQCE TCYLYMTLVG GEMRKSCVCC KRYWTHLHGK VKCFVAPMDR NSRHSMIIPE  120
SFVNYFGWKL SGTIELEAPN GNVYDVRVTE RRNKTFLRSG WEAFVDANYI VETDSLMFRY  180
RGNCRFNVLV FHSSGCEKVV SCARMLTNIS DQEPSTNSRD ISTSFSDGNT HSSARGRSDD  240
CQSGSSGHRR KRPKKDAISS PSEDSSGEDS PYEHESSKSE DTKRIGITPE HDDTDPYMMS  300
LGARLTQGQK KKVLEKVGAI ASDLHIYVAV MNKTNVRRSL TFATKYCDTY LRKGSRSLVF  360
QAEGKIQQWH GGLHVTDRAL RIRGGWTSFA RDNNLREGDI CLFELMKNKV GLKKMMVYII  420
RRERC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248255RRKRPKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-78HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158256.10.0B3 domain-containing protein Os03g0619600-like
TrEMBLM8C8Y50.0M8C8Y5_AEGTA; B3 domain-containing protein
STRINGEMT307390.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-19B3 family protein