PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT30632
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 130aa    MW: 14443.3 Da    PI: 8.8105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT30632genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.43.6e-165681126
              --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
              +ktelC+ + +tG C+yGd+C+FaHg
  EMT30632 56 FKTELCNKWEETGACPYGDQCQFAHG 81
              79***********************9 PP

2zf-CCCH20.21e-0694119126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ykte Cr  + +  C+yG rC+F H+
  EMT30632  94 YKTEVCRMVLNGEVCPYGHRCHFRHS 119
               9******999966**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-205088IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-115287IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-105582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.775583IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-135681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-1389119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-990120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.80793121IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-593120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNQATPAAAT PAAYTRKPSS QRAYAGPGAD GGKKGEEQKT KQDAAGELDV YNQGMFKTEL  60
CNKWEETGAC PYGDQCQFAH GVSELRPVIR HPRYKTEVCR MVLNGEVCPY GHRCHFRHSL  120
TAAERLLRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-2356119467Butyrate response factor 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-163HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.12e-93zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY56e-62C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A3B6GW714e-92A0A3B6GW71_WHEAT; Uncharacterized protein
TrEMBLA0A453F4I62e-93A0A453F4I6_AEGTS; Uncharacterized protein
TrEMBLM8CSQ42e-93M8CSQ4_AEGTA; Zinc finger CCCH domain-containing protein 9
STRINGEMT306323e-94(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-48C3H family protein