PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29957
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 581aa    MW: 62786.8 Da    PI: 9.1219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29957genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13336411455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55 
                hn+ ErrRRdriN+++  L+el+P++                              K +Ka++Le+A+eY+k Lq
  EMT29957 336 VHNMSERRRRDRINEKMRALQELIPNCNkvhdtstlarnleksltraqsdiqCFMVMKIDKASMLEEAIEYLKTLQ 411
               5*************************888****************9988887667789*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-16329364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526332410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.80E-14335415No hitNo description
Gene3DG3DSA:4.10.280.101.3E-17335415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10336411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-15338416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16392419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MLLRRSEPGN ELEELLWDNG PALRRTASPF PPFSCSAAGT MKAQELAKHP ASATAMAHGH  60
DDDAVPWLQH YPIIGVDDDG SGGDTAPLPQ EYFSTLFPGF SDLPAAVASR DAGAPSTSHA  120
AVVVPPLPEP PAPPKQQQPP PRTTGEGVMN FSFFSRPLQR SLPQASVRPS AAGSKSVESM  180
LLQTNRLRST PLFSEQRTAW LHPPKESPAT ASASRPPAPP VPVRHAAEPA AAFPQRLQPE  240
ARAAALPPRL QPEVRAVALP QRLQSEARAS EMPPPPATAT TSSVCSDNGE RSQLKRSSHQ  300
TLEWSVSQDD EDLDDEAGGL RRSAARSTKR GRTAEVHNMS ERRRRDRINE KMRALQELIP  360
NCNKVHDTST LARNLEKSLT RAQSDIQCFM VMKIDKASML EEAIEYLKTL QLQVQMMSTM  420
GTAGLCMAPM MAMQHMQMPP MAHFHHHHLG AMGFGMGAFD PRLVAGAGAA QFPYPMMPGA  480
PMFGAHAIAS PATCLAVSAV VQSSSLFSIQ ESHEKKALLL LGHVVQHKVI PPHNTTFLCS  540
MGKLLIQALT RSFRLAGVLG NAKAHATTCH ITPAKAQSKN K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3765940.0AK376594.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3128I15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164967.10.0transcription factor APG-like
TrEMBLM8CQY40.0M8CQY4_AEGTA; Transcription factor PIF3
STRINGEMT299570.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-25phytochrome interacting factor 3