PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT29036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 414aa    MW: 43693 Da    PI: 4.3068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT29036genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003390413123
               EEETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
               + C+ C+++F + s L++H +  H
  EMT29036 390 HACKSCSRTFGSVSALQSHEKAkH 413
               67*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.928390414IPR007087Zinc finger, C2H2
PROSITE patternPS000280392413IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MKFWGVEVKP GQTVYCDPGE GRVVHLTQVA LGEAEKGSVG ILVSAKIGDQ KGAIGTLSAE  60
NHPHIPCDLI FEKQFELSHS SKTASVFACG YKIFVPICES DSSELDSSEF DSSESDSSES  120
DSSEDEVETV NNQVTNRIVG NVVKPPTTKD DKKVTDKPDS GEDDSDFSSD SDDVSVFADD  180
NYADDGYSSL DTDSEEDGTG SEEMDTSSKE EDKDSPKTED GKKAVAETAL KTPASDDTSS  240
KEGSGDEENK NTPKPEDGKK TAAETALKTP ASTASSGPCA LQPEDGEKTV AAETDLKTPA  300
SDDTSNKEDT NDQEDKSTPK PEVGGKRAAE TALETPAPDK KAKIETPSGQ DADDKKTVHV  360
ATPHPAKQAD KAPAGNSKQN LKSKYVGGAH ACKSCSRTFG SVSALQSHEK AKHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-125HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163860.10.0histone deacetylase HDT3-like
TrEMBLM8CYS80.0M8CYS8_AEGTA; Histone deacetylase HDT3
STRINGEMT290360.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-24histone deacetylase 3