PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28879
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 541aa    MW: 59968.7 Da    PI: 9.5014
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28879genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.73.2e-09422464149
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
               sg+ GVr+++ +g W +e   +s+ g  +r+++g++ +a eAa+a++ a
  EMT28879 422 SGFFGVRQKP-SGNWGVE---FSDAG--RRWWIGTYPSAHEAARAYDVA 464
               5777****99.7******...76654..*******************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561124.29E-6980357IPR011009Protein kinase-like domain
Gene3DG3DSA:2.60.120.2002.3E-881113IPR013320Concanavalin A-like lectin/glucanase domain
SMARTSM002204.4E-15100362IPR000719Protein kinase domain
PROSITE profilePS5001133.064100362IPR000719Protein kinase domain
PfamPF000691.6E-38102304IPR000719Protein kinase domain
PROSITE patternPS001070106128IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.201.3E-18114164No hitNo description
Gene3DG3DSA:1.10.510.101.2E-36165356No hitNo description
PROSITE patternPS001080231243IPR008271Serine/threonine-protein kinase, active site
CDDcd000182.46E-16422477No hitNo description
SuperFamilySSF541712.03E-10422477IPR016177DNA-binding domain
PROSITE profilePS5103215.896423478IPR001471AP2/ERF domain
SMARTSM003802.1E-8423484IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-14424478IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGSRFEVEKF MELKTLGYGR QSASSYRFFL YSLSLVRVTC VGCPSDDEKF AGDLMQLLAN  60
SMAMMKRCLC RSGEDFKGLL RTTNIHLYSY KEIRRATNNF DHGNKLGRGG FGTIYKGTFG  120
DGTAFPAKVL SCESKQGIKE FLTEIESIGE AKHANLFSLL GCCVQKQNRI LVYEFAENNS  180
LDHALKGGKV HISALGSASG AAILPWSVRS DICMGTASGL SYLHEEHEPN IVHRDIKASN  240
VLLGRNYSPK IGDFGLAKLF PDNVTHVTTR VVGTTGYLAP EYVVHGQLTK KADVYSFGLL  300
LLEAWLLYEQ GRPLDIVDAN VKDYPEAEVL RYVKVGLACT QAAPDGRPTV RQVVKMLSRP  360
AAFRELEIRL ADHHYSSALT CPGLSLSPLS SMATSTPPRP GRTPPPLHRS PLAPKKTPKG  420
KSGFFGVRQK PSGNWGVEFS DAGRRWWIGT YPSAHEAARA YDVAVWRAER PRSHLNFLEI  480
ESRAKAEMLV PQGINMKKST TKKKKTKKPS VVVSAGETDE EAMARFAREH PEYVQAELEY  540
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3uim_A8e-598835820307BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A8e-598835820307BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of freezing tolerance that phosphorylates 14-3-3 proteins (e.g. GRF6) thus triggering their translocation from the cytosol to the nucleus in response to cold stress. {ECO:0000269|PubMed:28344081}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates upon P.brassicae oviposition and in response to bacterial elicitors (e.g. flg22 and elf26). {ECO:0000269|PubMed:17142483}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172944.10.0probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
SwissprotQ93YN12e-98CRPK1_ARATH; Cold-responsive protein kinase 1
TrEMBLM8C3Q40.0M8C3Q4_AEGTA; Putative LRR receptor-like serine/threonine-protein kinase
STRINGEMT288790.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.21e-11WRKY family protein
Publications ? help Back to Top
  1. DiƩvart A,Clark SE
    Using mutant alleles to determine the structure and function of leucine-rich repeat receptor-like kinases.
    Curr. Opin. Plant Biol., 2003. 6(5): p. 507-16
    [PMID:12972053]
  2. Liu Z, et al.
    Plasma Membrane CRPK1-Mediated Phosphorylation of 14-3-3 Proteins Induces Their Nuclear Import to Fine-Tune CBF Signaling during Cold Response.
    Mol. Cell, 2017. 66(1): p. 117-128.e5
    [PMID:28344081]
  3. Guo X,Xu S,Chong K
    Cold Signal Shuttles from Membrane to Nucleus.
    Mol. Cell, 2017. 66(1): p. 7-8
    [PMID:28388442]