PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28877
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 355aa    MW: 38462.2 Da    PI: 6.1694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28877genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.1e-16177228155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++g
  EMT28877 177 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRG 228
               78****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-697143IPR016177DNA-binding domain
SMARTSM003800.00197148IPR001471AP2/ERF domain
PROSITE profilePS510328.86115142IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-6115143IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-18177237IPR016177DNA-binding domain
PfamPF008478.6E-11177228IPR001471AP2/ERF domain
CDDcd000183.08E-11177238No hitNo description
Gene3DG3DSA:3.30.730.104.7E-19178236IPR001471AP2/ERF domain
SMARTSM003808.3E-32178242IPR001471AP2/ERF domain
PROSITE profilePS5103219.348178236IPR001471AP2/ERF domain
PRINTSPR003679.9E-5179190IPR001471AP2/ERF domain
PRINTSPR003679.9E-5218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSPPTNGSAS LPLTGLSDAV LFPFDGFSAD DFFATAPPPP PPPPLGADPG RLLLASSRND  60
VHASRDLAVA APVETTGSPS ALAPLPLTPS SCQRTSCYRG VTRWQFMPAC KYSGYEKEDR  120
AARAYDLAAL KYWGVNATTN FPKENYIREL EEMQNMSRQE LIASLRRKSS GFSRGASVYR  180
GVTRHHQHGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAALKFRGDN AVTNFEPSRY  240
NLEAIACSDL PVNGRRMSSH KPAVAAPEAQ GEITFVSSAP PIPQQSCSDV QVPPYVLHGL  300
LQLQASEPLH ALPLSSYSFG EPSFYWPFGD VEQMVQLDSK VEVAGGILQL ANSAV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098391e-124AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161337.10.0AP2-like ethylene-responsive transcription factor AIL7
SwissprotQ6PQQ35e-78AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM8CN450.0M8CN45_AEGTA; AP2-like ethylene-responsive transcription factor AIL5
STRINGEMT288770.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.17e-58AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]