PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 151aa    MW: 16640 Da    PI: 7.9476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28801genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-19656255
       AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
              +y+GVr+++ +g+Wv+eIr+p     k++r++lg++ tae+Aa+a+++a++ + g
  EMT28801  6 KYRGVRQRH-WGSWVSEIRHP---LlKKTRVWLGSYETAEDAARAYDQAAQLMSG 56
              8*******9.**********8...3456**********************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.58E-28564No hitNo description
Gene3DG3DSA:3.30.730.101.8E-33665IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21664IPR016177DNA-binding domain
SMARTSM003802.1E-36670IPR001471AP2/ERF domain
PROSITE profilePS5103221.786664IPR001471AP2/ERF domain
PfamPF008476.0E-12656IPR001471AP2/ERF domain
PRINTSPR003671.6E-10718IPR001471AP2/ERF domain
PRINTSPR003671.6E-103046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010162Biological Processseed dormancy process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPKLQKYRGV RQRHWGSWVS EIRHPLLKKT RVWLGSYETA EDAARAYDQA AQLMSGPTAR  60
TNFPSGAPVG GSLSPALRAK VEKCCMPTAK GAEMTGAAMA RGYDARQNKL EDIIKVVDEE  120
EECIEEMIRE LTHYGSMEIV LSPACSSSPA P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-18364263ATERF1
3gcc_A4e-18364263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146280.15e-59ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW53e-39ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLM8CY891e-108M8CY89_AEGTA; Ethylene-responsive transcription factor ERF003
STRINGEMT288011e-109(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-26ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]