PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28465
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family G2-like
Protein Properties Length: 381aa    MW: 42513.1 Da    PI: 8.0447
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28465genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like22.33e-073253473052
   G2-like  30 ktilelmkvkgLtlehvkSHLQk 52 
               k+ +e+m+v gLt+ ++kSHLQ+
  EMT28465 325 KQRMEAMGVTGLTIWNIKSHLQM 347
               6668999***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000817.8E-11623IPR002347Short-chain dehydrogenase/reductase SDR
SuperFamilySSF517355.15E-426208IPR016040NAD(P)-binding domain
PfamPF001061.5E-357174IPR002347Short-chain dehydrogenase/reductase SDR
CDDcd052338.62E-487208No hitNo description
Gene3DG3DSA:3.40.50.7201.2E-447207IPR016040NAD(P)-binding domain
PRINTSPR000817.8E-118293IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610146174IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000817.8E-11159178IPR002347Short-chain dehydrogenase/reductase SDR
Gene3DG3DSA:1.10.10.605.9E-10284347IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015996Biological Processchlorophyll catabolic process
GO:0055114Biological Processoxidation-reduction process
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0034256Molecular Functionchlorophyll(ide) b reductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAPPYNVLIT GSTKGIGYAL ARKFLKAGDN VVICSRSAER VESVRNDLKK EFGEQHVWGT  60
VCDVREGKDV KALVDFARDK LEYIDIWINN AGSNAYSYKP LVETSDEALI EVITTNTLGL  120
MLCCREAINM MWNQPRGGHI FNIDGAGSDG RPTPRFAAYG ATKRSVVHLT KSLQPGMVTT  180
DLLMSGATTK QAKFFINILA ETPDVVADYL VPNIREIPTN QSMKPTYIRF LTGLKAYSRI  240
FSRIAFGARR NKMMSNGKPT QNSDSSYMSG IPTCCLLRAM QPTRSLLHWT NDLHMIFVEA  300
KFLDETDAVL FNCPNSLEAK PTAVKQRMEA MGVTGLTIWN IKSHLQMATY LLMDDTEMVD  360
TAFSADELQM MEKELMNAIR A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuy_A6e-17721630217Short chain dehydrogenase/reductase
4iuy_B6e-17721630217Short chain dehydrogenase/reductase
4iuy_C6e-17721630217Short chain dehydrogenase/reductase
4iuy_D6e-17721630217Short chain dehydrogenase/reductase
4iuy_E6e-17721630217Short chain dehydrogenase/reductase
4iuy_F6e-17721630217Short chain dehydrogenase/reductase
4iuy_G6e-17721630217Short chain dehydrogenase/reductase
4iuy_H6e-17721630217Short chain dehydrogenase/reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for chlorophyll b degradation.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by dark treatment. {ECO:0000269|PubMed:18778405}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3690030.0AK369003.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083K11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181142.10.0chlorophyll(ide) b reductase NOL, chloroplastic-like
SwissprotQ84ST41e-173NOL_ORYSJ; Chlorophyll(ide) b reductase NOL, chloroplastic
TrEMBLM8BTV40.0M8BTV4_AEGTA; Granaticin polyketide synthase putative ketoacyl reductase 1
STRINGEMT284650.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109381212
Publications ? help Back to Top
  1. Kusaba M, et al.
    Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
    Plant Cell, 2007. 19(4): p. 1362-75
    [PMID:17416733]
  2. Sato Y, et al.
    Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice.
    Plant J., 2009. 57(1): p. 120-31
    [PMID:18778405]