PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 683aa    MW: 73817.1 Da    PI: 5.1769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28341genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.7e-06418439426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               +lC+f++  G C+ G+ CkF+H+
  EMT28341 418 KLCHFYMH-GKCQQGNACKFSHD 439
               79**8888.*************7 PP

2zf-CCCH18.14.9e-06445467225
               -S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
               k ++C +far G C  Gd C++ H
  EMT28341 445 KSKPCTHFAR-GSCLKGDDCPYDH 467
               6789******.************* PP

3zf-CCCH222.9e-07473494526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C++f ++G C +Gd+CkF+H+
  EMT28341 473 PCHNFVENGMCFRGDKCKFSHV 494
               7********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.187414441IPR000571Zinc finger, CCCH-type
SMARTSM003560.0072415440IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6415439IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4442468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281443470IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5443469IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5445468IPR000571Zinc finger, CCCH-type
SMARTSM003560.0037471495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5472495IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-4473494IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4473493IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864473496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MEDSLVPPVP PAPTTLFLTR RRSHLDSASY RTLSRLFSHC LHHRPSQLAA PAPLEVEPAA  60
ANPICDESPQ GCSVPPEDAE SERGKDLGEE ETAVRTSVIE NPSPAAVDAA TGNPIADPAV  120
APQRYMEHQV AGVQRVEGVT DMVVGGNVCR ETVALLEELG AEDVLRSMKD CLEGEVDELA  180
EPGVVVVNDD EHLLLDTMMT NFSGLIADAS GGTTSMLNYG VSGGEPHNDG NIAEGVKELG  240
AGTEEDRPMG DSDQHSVDGG VVEEGEIEGD MQALDVDESD DSELKDADDE ELGEDFANRV  300
LGENESSGQD IRCLNLLSTP KIKGTSDLVL NKEGYIKDDA LKHVTRAQAV SYDEIVEWNE  360
TPLPDTEAPK PGKRKRHLTE ERKAKKTKNK RVKRAQQRIA DGVKRLKLAP VIKPKPVKLC  420
HFYMHGKCQQ GNACKFSHDT TPLTKSKPCT HFARGSCLKG DDCPYDHELS KYPCHNFVEN  480
GMCFRGDKCK FSHVVPTADG PSKPDAKKSD ASLVSEKPGR EQTSSQKAST VHDGERVTSA  540
PTKHYSILKN LAGISVNALK ASTGTPKGVQ FRPSSKDRSN SSMLHQDALP IEKHMYTNGS  600
KHQNFGGPQA EEGDKNGIPN KQRSAPLFDE KNSSKEASSH PSSDPERTSL PTGSTTVLGS  660
LSTQHEVSEA SRILQEFLFG AGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658510.0AK365851.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038E14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184316.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184317.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184318.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184319.10.0zinc finger CCCH domain-containing protein 7
RefseqXP_020184320.10.0zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLA0A453EXS50.0A0A453EXS5_AEGTS; Uncharacterized protein
TrEMBLM8CX270.0M8CX27_AEGTA; Zinc finger CCCH domain-containing protein 7
STRINGEMT283410.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.24e-07C3H family protein
Publications ? help Back to Top
  1. Noller B,Fischer I
    Photodissociation dynamics of the 2-propyl radical, C3H7.
    J Chem Phys, 2007. 126(14): p. 144302
    [PMID:17444707]
  2. Ali MA,Dillstrom VT,Lai JY,Violi A
    Ab initio investigation of the thermal decomposition of n-butylcyclohexane.
    J Phys Chem A, 2014. 118(6): p. 1067-76
    [PMID:24344976]