PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family LFY
Protein Properties Length: 305aa    MW: 32823.3 Da    PI: 8.3372
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY281.72.5e-8612771287
   FLO_LFY   1 mdpea..fsaslfkwd...praaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslsei 96 
               mdp++  ++a+ f+wd   p+      pa + +    +++     a   a++ rele+l+ +yGvr +tva+i+elGft+stL+ m+++eldd++++l+ +
  EMT27094   1 MDPNDafLAAHPFRWDlgpPA------PAAVPPPPPPPPP---PPALPPANAPRELEDLVVGYGVRASTVARISELGFTASTLLVMTERELDDMTAALAGL 92 
               777665346779****44322......2223222222222...2345566779************************************************ PP

   FLO_LFY  97 frldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkk 197
               fr+dll+Ger+G++aa+raer rl++      r++    ++ +++d +sqe+ls+e++      a+sgg g+++a  ++a+ kk+++ +  +++kk++rkk
  EMT27094  93 FRWDLLIGERFGLRAALRAERGRLMSPG---CRHH--GYQSGSTIDGASQEVLSNERD-----GAASGGIGEEDAMRMMASGKKQKNGSAGRKAKKARRKK 183
               *************************955...5555..5677889***********987.....45566655444444444443333333333344666666 PP

   FLO_LFY 198 kkelkse......ededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfr 287
                ++l+ +      e+    ++e+++++ +g  g erqrehPf+vtepgevar+kknGLDYLf+LyeqCr fLlqvq++ak +G+k+Ptkv   + r
  EMT27094 184 VNDLRLDmqgdehEEGGGGRSESTESSAGGGVGGERQREHPFVVTEPGEVARAKKNGLDYLFHLYEQCRLFLLQVQSMAKLHGQKSPTKVH--IIR 277
               6665555333221111112234444455777788*******************************************************94..445 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.2E-1081274IPR002910Floricaula/leafy protein
SuperFamilySSF1014475.23E-62636No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDPNDAFLAA HPFRWDLGPP APAAVPPPPP PPPPPPALPP ANAPRELEDL VVGYGVRAST  60
VARISELGFT ASTLLVMTER ELDDMTAALA GLFRWDLLIG ERFGLRAALR AERGRLMSPG  120
CRHHGYQSGS TIDGASQEVL SNERDGAASG GIGEEDAMRM MASGKKQKNG SAGRKAKKAR  180
RKKVNDLRLD MQGDEHEEGG GGRSESTESS AGGGVGGERQ REHPFVVTEP GEVARAKKNG  240
LDYLFHLYEQ CRLFLLQVQS MAKLHGQKSP TKVHIIRHCY VTLSTYATLA ALSLNTATCQ  300
LLNSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A8e-27215273159PROTEIN LEAFY
2vy2_A8e-27215273159PROTEIN LEAFY
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2318900.0AB231890.1 Triticum aestivum WFLd mRNA for FLORICAULA/LFAFY-like protein, complete cds.
GenBankAB2318880.0AB231888.1 Triticum aestivum WFLa mRNA for FLORICAULA/LEAFY-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580435.11e-132PREDICTED: probable transcription factor FL
SwissprotQ0JAI11e-127FL_ORYSJ; Probable transcription factor FL
TrEMBLM8BYN90.0M8BYN9_AEGTA; Putative transcription factor FL
STRINGMLOC_14305.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82693649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.15e-26floral meristem identity control protein LEAFY (LFY)