PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26835
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 506aa    MW: 55267.1 Da    PI: 5.7412
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26835genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06264285223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                C +Cgk F+r  nL+ H+r H
  EMT26835 264 FCVICGKGFKRDANLRMHMRGH 285
               6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.6E-5261288No hitNo description
PROSITE profilePS5015711.614263290IPR007087Zinc finger, C2H2
SMARTSM003550.015263285IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5264289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
SMARTSM0035568312345IPR015880Zinc finger, C2H2-like
SMARTSM0035522350372IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MASDASGNTE PGQQGVRFSS MDQSCFARPG QSIPGYPPFF GPQSSNFYLP DDSVAKACDL  60
FEPNPPQNNP VADWDPQAML SNLTFLEQKI KQVKDIVQSM GNRGSQDAGG SCELAAKQQL  120
VTADLTSIII QLISTAGSML PSMKTPLLSS NPAVRQLNTP GSPMGFGSIV NQRPSTIREE  180
VVNDISKTSD YEELMNTLNT AHDEKDDLIK CPNPCVGEGP EPVPMEDHDV KESDDGGEAE  240
HLPPGSYVVL QLEKEEILAP HTHFCVICGK GFKRDANLRM HMRGHGDEYK TPAALAKPMR  300
DSGSDPTPVT RYSCPYVGCK RNKEHRKFQP LKTILCVKNH YKRSHCDKRY TCSRCNTKKF  360
SVIADLKTHE KHCGRDKWLC SCGTTFSRKD KLFGHVALFQ GHTPALPMDD IKASGALEQP  420
QGSEAMDDMV ASTGYNFPGS TSDGIPNLDM KVADDTRGYF SPLNFDPCFG ALDDFARPGF  480
DISENPFSFL PSGPGSCSFG QLSGDS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0348060.0KF034806.1 Triticum aestivum isolate D cultivar Saloio STOP1 gene, complete cds.
GenBankKF0348070.0KF034807.1 Triticum aestivum isolate D cultivar Ruivo STOP1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166559.10.0zinc finger protein STOP1 homolog
SwissprotQ943I60.0STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3B6H2G40.0A0A3B6H2G4_WHEAT; Uncharacterized protein
TrEMBLA0A453G1300.0A0A453G130_AEGTS; Uncharacterized protein
STRINGEMT268350.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-156C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]