PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26094
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 210aa    MW: 21573.2 Da    PI: 8.5096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26094genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001590101112
               EEETTTTEEESS CS
   zf-C2H2   1 ykCpdCgksFsr 12 
               +kC+ CgksFs+
  EMT26094  90 FKCSVCGKSFSS 101
               89********96 PP

2zf-C2H213.50.00022160182123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++C k F++   L  H r+H
  EMT26094 160 HRCSICQKEFPTGQALGGHKRKH 182
               79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.8E-890113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-890112No hitNo description
SMARTSM003553.790112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.01190117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.02E-8155182No hitNo description
PfamPF139123.6E-12159184IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078160182IPR007087Zinc finger, C2H2
SMARTSM003550.028160182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSAMEALH ALIPEQHQRD VEAAAALSGA TSGEESGHVL QGWAKRKRSR RQRSEEENLA  60
LCLLMLSRGG KQRVQAPQPE AFAAPVPAEF KCSVCGKSFS SYPAPGGHKT SHRVKQPSPP  120
ADAAAAPLVA LPAVAAVLPS AEPATSSTAA SSDGTTNRVH RCSICQKEFP TGQALGGHKR  180
KHYDGGVGAA ASSTELLAAA AAESEVGSTG
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTWZF1A0.0D16415.1 Triticum aestivum gene for zinc-finger protein WZF1, complete cds.
GenBankWHTWZF1B0.0D16416.1 Triticum aestivum mRNA for zinc-finger protein WZF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167815.11e-146zinc finger protein 1
SwissprotQ424301e-110ZFP1_WHEAT; Zinc finger protein 1
TrEMBLM8BVW01e-148M8BVW0_AEGTA; Zinc finger protein 1
STRINGEMT260941e-149(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.14e-18zinc-finger protein 1