PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25672
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 544aa    MW: 60474.3 Da    PI: 9.8268
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25672genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.83.1e-16440539899
               -HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
        B3   8 sdvlksgrlvlpkkfaeeh........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
               s++++   l+++k++++++         + k++ + l+le e g r+W  +l  r + +r ++ kGW +F+++n+L++ D ++Fkl+++ ++ +++v ++r
  EMT25672 440 SSNSSGPYLTFSKQYVSRYlekqyftrHHAKKNVISLVLEREGGsRRWHTEL--RLGNNRPMIVKGWTSFARDNRLQVDDLCLFKLMRNeETLKMMVYIIR 538
               555555566666666666666666665333446678999999889*******..77888899*************************999*********99 PP

               S CS
        B3  99 k 99 
               +
  EMT25672 539 R 539
               7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.019229331IPR003340B3 DNA binding domain
CDDcd100171.04E-10234325No hitNo description
SuperFamilySSF1019362.35E-11235323IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-11237320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.332244328IPR003340B3 DNA binding domain
CDDcd100172.80E-13421538No hitNo description
SuperFamilySSF1019368.04E-14434542IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-12434540IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-14438541IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-14439539IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688464540IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MTNVEQRKFV VRVHILNKAC TDGTTQSQAG EGSDSDRRPK EGSSHYYKAA NTPAVSYTSK  60
DFSEENPSAY ESVQLHDPRM PSKDYVLAGK CDLTLAQEKK IQALLGKIRP EIPVLVAQMK  120
KSNVESGRGN LHQRVTKSMV LLDGPPACPL AAQLAASCTP MGLLPGATPT RPWKFAAAAA  180
GLAFTADMGT WPMFYSSSES ACPLMSVVEL RSIIEPDRLA SSALRPGVNK VELLTPVSVF  240
RQAIPKDYAL KYFPCESTSI KLQLPNKNKA WKCRLHIRPS GVHNPGRRSL YWRLFAVDNH  300
VREGDICLFQ PMTNDKHRTF IVIVHLLHKA SVESSPGGRS DVGSNHGRRS AKMVLTANVN  360
EEPATDGEEI SPSGHENAGD SDDSEGASEP LFVAPDRPRL TDAQKKKVLE KVHAIGSESL  420
PICVIVMNNT SVRLCKSSNS SNSSGPYLTF SKQYVSRYLE KQYFTRHHAK KNVISLVLER  480
EGGSRRWHTE LRLGNNRPMI VKGWTSFARD NRLQVDDLCL FKLMRNEETL KMMVYIIRRK  540
KCLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155765.11e-106B3 domain-containing protein Os03g0619600-like
RefseqXP_020198702.11e-106B3 domain-containing protein Os03g0619600-like
TrEMBLM8CEW40.0M8CEW4_AEGTA; B3 domain-containing protein
STRINGEMT256720.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172