PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25639
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 844aa    MW: 93331.7 Da    PI: 6.2075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25639genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.6e-07304326427
               ---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
               ++C ++++ G C  G+ C+F+Hgp
  EMT25639 304 VPCYYYQK-GMCAKGNLCTFSHGP 326
               79******.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035677214238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.69241267IPR000571Zinc finger, CCCH-type
SMARTSM003562.3243266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286300327IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4301326IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.91E-5302325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MDFQAPAGDD RRSTDLNKQA VDEQSPQQSA ADGKAKAGDQ TSGLTTLFVP KLHDSDPSVL  60
SAVLGASTKG KRTIFRSEVT YKRNGHIMVL VGVSLLVVPK SGYQLPLLPA TIRKERGWRD  120
ADRRDGWREG GRLYLFCRRA TIGEGSSLGP EACDGIACPE APTLWRFPLY SLRPGMLVGV  180
HFFDKHFGTE GNEACIFSIC RGDVTCKRNG DARKWQCLCY QLRRGKRGGS ECEYRHSDAA  240
RVNPRDCWYW FNGNCANAKC AFRHPPLDDL LGASATPRAP QQSAPQVPVT AQALPSNVTA  300
KPVVPCYYYQ KGMCAKGNLC TFSHGPQFAG NPALQPHLQL KNSNSWTKPS NSPQQSTTPA  360
VHGELKVGAQ NGRPAQKQNP TSRAYHSPGI YQNQNNNPYV LSGAAKSYQP QRSVQAESAE  420
NVMETGEFVR EPSAGSSVVA GSAEDDAERS FKEGHASSYR RASGEQNSGI RRQAHGGYEL  480
ERSSHRSSSD RLVSERRLMQ RESMPVTAES SDLRHRLLKQ RRLNDSRSTQ VPDRQDRRYP  540
EDERGSHHHR RGEERAAHDG LSRSRLQGRI KLPGEASLDR LGPHPHLEKE RGHRDRLSPP  600
KQTDLRAKLH DRLKARSNEE VPGNLKSSVV KASSGEDAGV VNFSGPKSLA ELRAKKAAYR  660
SGENTVKNAD RVARPARMTS EIVAKRDSPD PVPFDGPKPL SVILKRKREA ASADSGSMQE  720
EQVAGEEEQS LNNSRIVEND RVEASTEENE VEEEEFHPED DVMYDDDGLS PADDNTAEAA  780
ADVGKEELEE GQQEDLETAA EEEYDYEAAD DTNAEGENDY QEYEDDDDLE DDDDFARKVG  840
VLIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650990.0AK365099.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030O09.
GenBankAK3731890.0AK373189.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023E17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201475.10.0zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLM8BUL40.0M8BUL4_AEGTA; Zinc finger CCCH domain-containing protein 19
STRINGEMT256390.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]