PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 367aa    MW: 40238.2 Da    PI: 6.261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24611genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.8e-06206225120
               EEETTTTEEESSHHHHHHHH CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
               ++C+ C+ksF+r  n++ H+
  EMT24611 206 FVCHVCNKSFNRYNNMQMHM 225
               89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-5189229No hitNo description
PROSITE profilePS5015710.388206233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-5206225IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280208228IPR007087Zinc finger, C2H2
SuperFamilySSF576679.36E-5276310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGLRTCGAME GEHVVASPFF EWLKPPPASP SSSRSSSTFS SSSSSMASGH QEDRSSVACL  60
PLLRMLEEGK GAGGDHDHPA PPVKEEIMGS GAAEVLGPGV DLNIGLPVGG SCDDDIMEEE  120
SQEEDDDHDC DEEEEEEMDE LEPNHGGCKV EAEEKEKHGE PVVSVEGSNS VSMPEFGVLG  180
AESGVPMSCG YWIPTPAQIL VGPVQFVCHV CNKSFNRYNN MQMHMWGHGR EYRKGPESLK  240
GTQTLALLKL PCYCCAAGCR NSVAHPRARP LKDFRTLQTH YKRKHGARPF RCRRCAKPFA  300
VKGDWRTHEK NCGKRWFCAC GSDFKHKRSL NDHVRSFGGD HLPVALDGAP APPPAPGEDR  360
RIIRFQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592220.0AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182641.10.0protein TRANSPARENT TESTA 1-like
TrEMBLM8CM990.0M8CM99_AEGTA; Protein TRANSPARENT TESTA 1
STRINGEMT246110.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.14e-92WIP domain protein 5