PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22877
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 221aa    MW: 24998 Da    PI: 7.7181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22877genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-122801999
              -HHH.HTT---..--SEEEEEE.TTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3 19 pkkfaeehggkkeesktltled.esg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
              p kfa+   g +  +++++l+   sg    W+vk+  +   g+++l++GW++F++a++L+ g +++F++dg  ++ l+vkvf+ 
  EMT22877  2 PDKFAKVLAGRE--PREVKLREaGSGrhSLWDVKVVLDAD-GHMYLGRGWEQFARAHDLRLGYILLFSFDG--DAVLTVKVFDV 80
              899997777774..5578888834447788*****65555.5778***********************887..55569999985 PP

2B347.72.8e-151292141498
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
               + l +p +f e+hg+ +++  +++l+  sg+sW v+l++       g+     ++ GW +F  +n+L +gD++ F+  +  ++ el+v+v++
  EMT22877 129 QYLNVPLEFHEAHGYAERS--KVVLR-MSGKSWPVTLKHtnrA---GGktrSSFRYGWHQFLVDNRLTVGDTCFFRALRGgEDHELKVQVRK 214
               56889********999655..56655.59********995433...33355999**********************77666********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.311181IPR003340B3 DNA binding domain
CDDcd100171.86E-13179No hitNo description
PfamPF023625.8E-10280IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-15283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-15283IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0019581IPR003340B3 DNA binding domain
PROSITE profilePS5086311.632116216IPR003340B3 DNA binding domain
SMARTSM010190.0046123216IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22128216IPR015300DNA-binding pseudobarrel domain
PfamPF023624.1E-12129214IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-15129214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-12131214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MPDKFAKVLA GREPREVKLR EAGSGRHSLW DVKVVLDADG HMYLGRGWEQ FARAHDLRLG  60
YILLFSFDGD AVLTVKVFDV SMCRRHYQRD DDASSGSSND GSGSAETEVD EAPTSQFTGA  120
CHFLEKQQQY LNVPLEFHEA HGYAERSKVV LRMSGKSWPV TLKHTNRAGG KTRSSFRYGW  180
HQFLVDNRLT VGDTCFFRAL RGGEDHELKV QVRKLDGSFV D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148431.11e-151B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-68Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLM8C7871e-162M8C787_AEGTA; B3 domain-containing protein
STRINGEMT228771e-163(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.18e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]