PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22546
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 832aa    MW: 92563.5 Da    PI: 9.2641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22546genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.71.2e-07648694153
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
               s+++ Vr  +++g + +eI+       r kr  l  f+t eeAa+a++aa+ +l
  EMT22546 648 SDFRRVR-ERRSGAFSSEIWF------ReKRLILSIFDTVEEAARAHDAAAWRL 694
               6788898.6779*********......55*********************9665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.560.103.2E-6049186IPR027413GroEL-like equatorial domain
TIGRFAMsTIGR023451.2E-21850491IPR012720T-complex protein 1, eta subunit
CDDcd03340052601No hitNo description
SuperFamilySSF485924.58E-5461189No hitNo description
PfamPF001187.4E-12579490IPR002423Chaperonin Cpn60/TCP-1 family
PRINTSPR003042.5E-298197IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
PROSITE patternPS0075008496IPR002194Chaperonin TCP-1, conserved site
PRINTSPR003042.5E-29102120IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
PROSITE patternPS007510104120IPR002194Chaperonin TCP-1, conserved site
PROSITE patternPS009950132140IPR002194Chaperonin TCP-1, conserved site
PRINTSPR003042.5E-29132151IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
Gene3DG3DSA:3.30.260.102.3E-33196254IPR027410TCP-1-like chaperonin intermediate domain
SuperFamilySSF548491.22E-25198259No hitNo description
SuperFamilySSF520291.47E-47253422IPR027409GroEL-like apical domain
Gene3DG3DSA:3.50.7.102.5E-54255417IPR027409GroEL-like apical domain
SuperFamilySSF548491.22E-25415449No hitNo description
PRINTSPR003042.5E-29417439IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
Gene3DG3DSA:3.30.260.102.3E-33418447IPR027410TCP-1-like chaperonin intermediate domain
Gene3DG3DSA:1.10.560.103.2E-60448489IPR027413GroEL-like equatorial domain
SuperFamilySSF485924.58E-54449491No hitNo description
PRINTSPR003042.5E-29451463IPR017998Chaperone tailless complex polypeptide 1 (TCP-1)
SuperFamilySSF485927.98E-22513598No hitNo description
Gene3DG3DSA:1.10.560.105.5E-25516598IPR027413GroEL-like equatorial domain
PfamPF001187.0E-20516598IPR002423Chaperonin Cpn60/TCP-1 family
Gene3DG3DSA:3.30.730.106.6E-13649705IPR001471AP2/ERF domain
SMARTSM003801.0E-5649710IPR001471AP2/ERF domain
PROSITE profilePS5103214.104649704IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-9650704IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006094Biological Processgluconeogenesis
GO:0006096Biological Processglycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006457Biological Processprotein folding
GO:0009651Biological Processresponse to salt stress
GO:0009664Biological Processplant-type cell wall organization
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005524Molecular FunctionATP binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MSSMMVSTSH RETNDPSAPR RRLPLSRKHA SLGSIHGSDS FPWGFRFPQQ PQIILLKEGT  60
DTSQGRAQVV SNISACTAVA DTVRTTLGPR GMDKLIHDDK GTTISNDGAT IMRLLDIVHP  120
AAKILVDIAK SQDSEVGDGT TTVVLLAAEF MKEAKPYVED GVHCHNIIRS YRSAGNMAIE  180
RVKELAVSIE GKSLEEKKSL LAKCAATTLS SKLISGEKEF FASMVVDAVL AIGHDDRLNL  240
IGIKKVPGGT MRDSFLVNGV AFKKTFSYAG FEQQPKKFLN PKILLLNIEL ELKSEKENAE  300
IRLSDPLQYQ SIVDAEWNII YDKLDKCVQS GAKIVLSRLA IGDLATQYFA DRDIFCAGRV  360
TEEDLQRLSS ATGGTVQTSV NNVIDEVLGT CEIFEEKQVG NERFNIFSGC PSGQTATIVL  420
RGGADQFIEE AERSLHDAIM IVRRAVRNST VVPGGGAIDM EISKHLRLHA RSIAGKSQVF  480
VNSFAKALEF LLLMSGEVVK GQPITFPKPK KWLMFAVRVI PRQLCDNAGF DATDVLNKLR  540
QKHAADGGAN YGVDINTGGI ADSFANFVWE PAVVKINAIN AATEAACLIL SVDETVKNPK  600
SESAQGDAAA MGGRGGGGMR GRGGRGMRRR RRSLHTLFAA HSRRLGASDF RRVRERRSGA  660
FSSEIWFREK RLILSIFDTV EEAARAHDAA AWRLLRPRRE MNFPNVSSQR AQDLAPLPRL  720
FTDEDRRVHR RRLRRRAIAE KDVKALVVWC RGFPQDIVDE RQFYKQLMLE RDARRRERAA  780
YREDKRSRKQ AAQLKLKLRE TWGWDFEDEQ LADAYLQTSE EDITESESES DE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4b2t_h0.0536016525T-COMPLEX PROTEIN 1 SUBUNIT ETA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1611617GGRGGGG
Functional Description ? help Back to Top
Source Description
UniProtMolecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2518600.0AK251860.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf138g19, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201624.10.0T-complex protein 1 subunit eta
SwissprotQ9SF160.0TCPH_ARATH; T-complex protein 1 subunit eta
TrEMBLM8CH480.0M8CH48_AEGTA; T-complex protein 1 subunit eta
STRINGEMT225460.0(Aegilops tauschii)
Publications ? help Back to Top
  1. Hill JE,Hemmingsen SM
    Arabidopsis thaliana type I and II chaperonins.
    Cell Stress Chaperones, 2001. 6(3): p. 190-200
    [PMID:11599560]
  2. Noir S,Bräutigam A,Colby T,Schmidt J,Panstruga R
    A reference map of the Arabidopsis thaliana mature pollen proteome.
    Biochem. Biophys. Res. Commun., 2005. 337(4): p. 1257-66
    [PMID:16242667]
  3. Sorin C, et al.
    Proteomic analysis of different mutant genotypes of Arabidopsis led to the identification of 11 proteins correlating with adventitious root development.
    Plant Physiol., 2006. 140(1): p. 349-64
    [PMID:16377752]
  4. Endow JK,Singhal R,Fernandez DE,Inoue K
    Chaperone-assisted Post-translational Transport of Plastidic Type I Signal Peptidase 1.
    J. Biol. Chem., 2015. 290(48): p. 28778-91
    [PMID:26446787]