PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22495
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 399aa    MW: 43671.7 Da    PI: 5.7713
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22495genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2507.3e-1661109355
       AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               y+GVr+++ +grW++e+r+p   + r kr++lg+f+ a +Aa a+++a+ +++g
  EMT22495  61 YRGVRQRR-WGRWASEVREP---N-RgKRHWLGTFDNAVDAALAYDRAAVAIFG 109
               9****998.*******9998...3.35*********************988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.4360117IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-2060118IPR016177DNA-binding domain
SMARTSM003801.4E-2860123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-2860118IPR001471AP2/ERF domain
PRINTSPR003677.3E-116172IPR001471AP2/ERF domain
CDDcd000186.59E-2661117No hitNo description
PfamPF008474.2E-961105IPR001471AP2/ERF domain
PRINTSPR003677.3E-1199119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MPVEGAVGIK GEEMEQASAT TPTTSTIRTK RARPKSSATL KTPVAAPPGG EGGPEDRDHM  60
YRGVRQRRWG RWASEVREPN RGKRHWLGTF DNAVDAALAY DRAAVAIFGS RAIVNFPSAF  120
FISTAQPVQC HPASSSPSAA AASVFVEHKL RPMLAAASVL TEHGVKPMMA AASILDEHEV  180
KPVITASVFG EREVKPMVAA SVFREREVKP VITASVFHEH EVKPVITASV FGEREVKPMV  240
AASVFGEREV KPMVAASVFH EREVKPMVPA SVFGEREVKP MVAASDFGER EMKPMVAASV  300
FGECEVKPIV AASVFGEHEV KPMPVHGVGD DAWITQHWDA SWAEREEVYA DYLKDIAMYI  360
DVDAITEKLA YHPDIYGKDY QLDGFDAEFT VSPLWELGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1761117360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1761117663ATERF1
3gcc_A3e-1761117663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169668.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLM8BC690.0M8BC69_AEGTA; Dehydration-responsive element-binding protein 2A
STRINGEMT224950.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141022226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.13e-14related to AP2 2