PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22445
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 191aa    MW: 20978.7 Da    PI: 8.8218
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22445genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.7e-193989155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
              + ++GVr++  +grWvAeIr+p   + r +r +lg+f ta +Aa+a++aa+++l+g
  EMT22445 39 CPFRGVRQRT-WGRWVAEIREP---N-RgARLWLGTFATALDAARAYDAAARALYG 89
              679****999.**********8...3.35***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3040103IPR001471AP2/ERF domain
PROSITE profilePS5103220.7054097IPR001471AP2/ERF domain
PRINTSPR003673.4E-94152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-284197IPR001471AP2/ERF domain
CDDcd000184.02E-154172No hitNo description
PfamPF008471.5E-124189IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-194197IPR016177DNA-binding domain
PRINTSPR003673.4E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKKTPTPADQ QQRRRRCCPL RRSRKGCMKG KGGPENQRCP FRGVRQRTWG RWVAEIREPN  60
RGARLWLGTF ATALDAARAY DAAARALYGD CARLNLAAPP LPPMTATVPL PHAQVQQPPA  120
RSTDTNNTTA LCSSTSTAST TTPTNLGTFD IEWSYYNAAG VLELGDFEAY VAGLPKAEDF  180
GLEGFEEVMD D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-134196662ATERF1
3gcc_A2e-134196662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184362.11e-138LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA14e-66DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLM8BC221e-138M8BC22_AEGTA; Dehydration-responsive element-binding protein 2A
STRINGEMT224451e-139(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-25ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]