PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21637
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 452aa    MW: 48344.3 Da    PI: 8.0392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21637genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.72.6e-105177127
              --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
              +++++C +++rtG C yG++C+++H++
  EMT21637 51 PGEANCVYYLRTGACGYGETCRYNHPR 77
              57899********************96 PP

2zf-CCCH38.32.2e-12123149127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C +++++GtCk+G++Ck++H++
  EMT21637 123 PGQPPCEYYMKNGTCKFGSNCKYNHPR 149
               5899*********************96 PP

3zf-CCCH17.66.8e-06170186319
               S---SGGGGTS--TTTT CS
   zf-CCCH   3 telCrffartGtCkyGd 19 
               +++C+++ +tG+Ck+G+
  EMT21637 170 EKECSYYIKTGHCKFGS 186
               689*************8 PP

4zf-CCCH38.42e-12286312127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C+++++tGtCk+G++Ck++H++
  EMT21637 286 PGQPECHHYMKTGTCKFGSTCKYNHPQ 312
               5789*********************97 PP

5zf-CCCH25.42.5e-08335357426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                +C ++++ G+Ck+G+ CkF H+
  EMT21637 335 QPCLYYSQHGFCKFGPGCKFDHP 357
               69********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2915078IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-75277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-65478IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45677IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.093122150IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7122149IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10124149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6125150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-5127150IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.216167186IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197285313IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10287312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6288312IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389331359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6333361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4335356IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-6335357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MESYAASPKD GGGGGAEGGR ADAATGLEES MWRLGLAGGE EAAGEGLPER PGEANCVYYL  60
RTGACGYGET CRYNHPRDRA AASSWDLLLT TRQSLIMTDR FNYSWSFDGG TRTARTVEYP  120
ERPGQPPCEY YMKNGTCKFG SNCKYNHPRE GGSVQPVVLN SCGYPLRLGE KECSYYIKTG  180
HCKFGSTSSW QLGRPSVLPG SFFPGSYPPM MHPSAVMPMQ GWNPYMPPIN QVASAGGQQT  240
VQAGPLYGLS HQGPPSAVAY GSNYASLSSS AWPSSDKQEV VFPERPGQPE CHHYMKTGTC  300
KFGSTCKYNH PQYLSTPRSN YMLSPLGLPI RPGAQPCLYY SQHGFCKFGP GCKFDHPLGA  360
LSYSPSASSL GDVPIAPYPL SLPVAPMAPS PSSSGLRPDY ILAKDSSANQ PASPGTTFGN  420
AGQLSKIYAP HMLLRPPTSA TGATVTIHGG EF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3553790.0AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17.
GenBankAK3612940.0AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190679.10.0zinc finger CCCH domain-containing protein 5-like
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLM8C3I40.0M8C3I4_AEGTA; Zinc finger CCCH domain-containing protein 5
STRINGEMT216370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-95C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]