PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20268
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 440aa    MW: 46738.1 Da    PI: 8.5761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20268genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.4e-053303681255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               R +++ ++++ L++++ +      +K + a++L +A+ YIk Lq
  EMT20268 330 RKEKLGDRIAALQQMVSPF-----GKTDTASVLMEAIGYIKFLQ 368
               7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.829318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-5328372No hitNo description
SuperFamilySSF474596.8E-11328380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8332375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAFFFPAAAA RSSSSSRCRR QPPPMEPTTN ASSTWFWLSR EQLSSDELEA LLSAQVHQHH  60
SHSQLLAAPL TTNPHHQLSS LLMMQELGFQ WSSSCGAADG DSNETAQDAV KEDAELPGPL  120
ALPRPSSSSS MAYDDDMAVD GAVVLPSVNV SRLQKIPCPV AAGDLAVDGA VVLPGVNVSR  180
LQKIPCPVAA GPFGGRAEAT LEMLASAKFC KSLLSCSQAS STVLLHNGGG TAPLLGMGEH  240
HVAYGLPPPV HRLQGPSSIL HTYNKMGVPA ALLSGNGSAL QAAAGRSSGG GSLHEEQQLQ  300
MVAVSSKKKA RLLHSRPATN NNILPSFKVR KEKLGDRIAA LQQMVSPFGK TDTASVLMEA  360
IGYIKFLQDQ VETLSGPYMR SAKHKKARTT QQRGLSDTGH QKEEAKVDLR SRGLCLVPLA  420
CTSYVTNENG IWAPPNFRGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-147HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153231.10.0uncharacterized protein LOC109738546
TrEMBLN1R1M90.0N1R1M9_AEGTA; Transcription factor bHLH110
STRINGEMT202680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-39bHLH family protein