PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19751
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 342aa    MW: 37513.8 Da    PI: 4.635
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19751genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.45e-2085135155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               +g++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+++++g
  EMT19751  85 CGFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAEDAARAYDEAARAMYG 135
               79*****999.**********8...2.58************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1385135IPR001471AP2/ERF domain
CDDcd000181.09E-3085145No hitNo description
SuperFamilySSF541713.01E-2186144IPR016177DNA-binding domain
SMARTSM003801.4E-3586149IPR001471AP2/ERF domain
PROSITE profilePS5103222.386143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3187144IPR001471AP2/ERF domain
PRINTSPR003672.4E-108798IPR001471AP2/ERF domain
PRINTSPR003672.4E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MTMVLPQGSL YVPVAVHLFL WGWKKRPRRS RDGPNSVSET IRRWKEVNQQ LEHDPQGAKR  60
ARKPPAKGSK KGCMLGKGGP ENTQCGFRGV RQRTWGKWVA EIREPNRVSR LWLGTFPTAE  120
DAARAYDEAA RAMYGALART NFPVHPAQAP AVAVPAAIEG VVRGASASCE STTTSTNHSD  180
VASSLPRQAQ APEIYSQPDA LESTESVVLE SVEHYSHQDT VPDAGSSISR STSEEDVFEP  240
LEPISSLPDG EADGFDIEEL LRLMEADPIE VEPVTGGSWN GGANTGVEMG QQEPLYLDGL  300
DQGMLEGMLQ SDYPYPMWIS EDRAMHNSAF HDAEMSEFFE GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1587145665ATERF1
3gcc_A3e-1587145665ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1970520.0EU197052.1 Aegilops tauschii DRF1 (DRF1) gene, complete cds, alternatively spliced.
GenBankKF7316630.0KF731663.1 Aegilops tauschii dreb2 (DREB2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156298.10.0dehydration-responsive element-binding protein 2B-like isoform X2
SwissprotQ5W6R45e-86DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLR7WBI30.0R7WBI3_AEGTA; Dehydration-responsive element-binding protein 2A
STRINGEMT197510.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115153037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.15e-35ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]