PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19311
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family G2-like
Protein Properties Length: 396aa    MW: 43859.1 Da    PI: 6.629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19311genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.31.1e-25222286155
   G2-like   1 kprlrWtpeLHerFveaveqLGGse..........kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
               k+r+rWt eLHerFvea+++LGG+e          +AtPk +l+lmkv+gLt+ hvkSHLQ YR 
  EMT19311 222 KTRMRWTLELHERFVEALKKLGGPEsrvipllnfwEATPKGVLKLMKVEGLTIFHVKSHLQNYRH 286
               68**********************955555555555****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.94E-13219286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-25221286IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-18222286IPR006447Myb domain, plants
PfamPF002494.3E-8224285IPR001005SANT/Myb domain
PfamPF143797.3E-21320365IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSTQSVIPVK HFIAPDIRAH TCNAPQPSVH QMFNAKSDIY SSADDTSRVS YADLSDPNSS  60
SSSTFCTSMY SSSSTKPSGF SFLPHPSKCE QQQVSAAKSS SSSLLFAADP STGVHGDLEH  120
PLDLKDFLNL SGNASDSSFR GGGNAMDFSE QLEFQFLSEQ LGIAITDNEE SPRLDDIYGI  180
PPQCSPSLVS PSSDHEDLRS GGSPVEAQLT SSHSSSGATC SKTRMRWTLE LHERFVEALK  240
KLGGPESRVI PLLNFWEATP KGVLKLMKVE GLTIFHVKSH LQNYRHVKYI PEKKEVKRPC  300
SEDNNAKSAS GIDSGNKKSF QMAETLRMQM EVQKQLHEQL EVQRELQLRI EEHARYLQQI  360
LEQQKARKST VPKPEEKTEV NTTSAPPLKR KISDTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-20222289259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269|PubMed:26082401}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269|PubMed:26082401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3304830.0KP330483.1 Triticum aestivum MYB transcription factor SM153-1 mRNA, complete cds.
GenBankKP3304840.0KP330484.1 Triticum aestivum MYB transcription factor SM153-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187502.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_020187503.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
RefseqXP_020187504.10.0protein PHOSPHATE STARVATION RESPONSE 3-like
SwissprotQ6YXZ41e-129PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBLR7WAQ00.0R7WAQ0_AEGTA; Myb family transcription factor APL
STRINGEMT193110.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45263769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.26e-70G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]