PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18191
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 412aa    MW: 45651.1 Da    PI: 5.8626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18191genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05222243223
               EETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                C +Cgk F+r  nL+ H+  H
  EMT18191 222 FCAICGKGFKRDANLRMHMHGH 243
               6******************877 PP

2zf-C2H212.30.00051341354619
               TTEEESSHHHHHHH CS
   zf-C2H2   6 CgksFsrksnLkrH 19 
               Cg++F+rk+nL +H
  EMT18191 341 CGTTFTRKDNLFTH 354
               ************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.098221243IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-5221273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.074221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SMARTSM0035571271304IPR015880Zinc finger, C2H2-like
SMARTSM0035534309331IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDRGKNIIQD EPPNLSSNPL YYQPSSENLL LDMEMQQPFS ASTLPFDPAP STSIPHMDWN  60
PGTMLDNLSF IEDKIRQAKD VIRSMISDGS QLSTQQQQQP GAFSLHCRTH PFLASPPATV  120
QMANLAASGS GTSSSSVRNR AVSEDHKEEM HSPDYEELFK GLTDYAVEVE GIEIGNSLLV  180
DEHDTKDGNE VGIGIDADSL PPGTYELLQL EEDEILAPQT HFCAICGKGF KRDANLRMHM  240
HGHGDEYKSP AALAKPPRDE SLDHAAIVKR YSCPVAGCKR NRLHKGFLPL KTILCVKNHY  300
KRSHCVKNYT CSRCHAKKFS VMADLKTHEK HCGQVRWVCS CGTTFTRKDN LFTHVGVDGL  360
DSFTEDFLST ENFGSFSFGL GQFDGFPEDN SEGSFMLLPP GHHQSAEKNG ES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977257.11e-158zinc finger protein STAR3
SwissprotQ943I61e-103STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLN1R1520.0N1R152_AEGTA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGEMT181910.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-88C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]