PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 230aa    MW: 23893.2 Da    PI: 10.0008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17685genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-083257227
              -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
              kt+lC+ f     Ck G++C+FaHg+
  EMT17685 32 KTRLCNKFNTAEGCKWGNKCHFAHGE 57
              9***********************96 PP

2zf-CCCH37.92.9e-12196221127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt+lC++f + G C +GdrC+FaHg+
  EMT17685 196 FKTKLCDNFNK-GSCTFGDRCHFAHGE 221
               69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-142762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-82961IPR000571Zinc finger, CCCH-type
SMARTSM003560.073057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8783058IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-53257IPR000571Zinc finger, CCCH-type
SMARTSM003226.8E-11100170IPR004087K Homology domain
PROSITE profilePS5008414.99101165IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-15101169IPR004088K Homology domain, type 1
SuperFamilySSF547913.36E-16103197IPR004088K Homology domain, type 1
CDDcd001053.70E-14103166No hitNo description
PfamPF000131.5E-11103167IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.5E-16194226IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-8195221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.943195222IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9195225IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-10196221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTNLGGPAVS APQGRMPMGP GVPDGPPTPS LKTRLCNKFN TAEGCKWGNK CHFAHGEREL  60
GKPMLLNNSM APPMGPRPNG HFQPPPMPGP DMVPPSTFGA SATAKISVDA SLAGAIIGKG  120
GVNTKHISRM TGAKLAIRDN EADPNHKNIE LEGSFDQVNH ASAMVKELIL RIGGNAPPQA  180
KNPGRGPAGG GGGSNFKTKL CDNFNKGSCT FGDRCHFAHG ESELRKSAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552310.0AK355231.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1017N10.
GenBankAK3566640.0AK356664.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1037L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159827.11e-167zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ69XQ31e-131C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A453SK591e-166A0A453SK59_AEGTS; Uncharacterized protein
TrEMBLA0A453SKQ71e-166A0A453SKQ7_AEGTS; Uncharacterized protein
TrEMBLA0A453SKS61e-166A0A453SKS6_AEGTS; Uncharacterized protein
TrEMBLR7WD491e-166R7WD49_AEGTA; Zinc finger CCCH domain-containing protein 44
STRINGEMT176851e-167(Aegilops tauschii)
STRINGTraes_7DL_BC8BA3B78.11e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-56C3H family protein