PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17653
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 315aa    MW: 33695.8 Da    PI: 4.8893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17653genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19104151455
       AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               +G+r+++ +g+W+AeIrdp     + +r++lg+f+ta++Aa+a++ a+++l+g
  EMT17653 104 HGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFDTADDAARAYDVAARRLRG 151
               6******.**********72....35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.853102159IPR001471AP2/ERF domain
SMARTSM003802.2E-33102165IPR001471AP2/ERF domain
PRINTSPR003671.1E-9103114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-31104160IPR001471AP2/ERF domain
PfamPF008478.4E-12104151IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-21104160IPR016177DNA-binding domain
CDDcd000182.22E-30105160No hitNo description
PRINTSPR003671.1E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MCGGAILAEL IPPSAGRASK QVAAGRASPK KAGKSKGQKY GSVADVDDFE AAFENFDDDL  60
DLQAEEDGDD HVVFASRPAF SPAYDGGRRA VPAASKKTSV RPLHGIRQRP WGKWAAEIRD  120
PHKGTRVWLG TFDTADDAAR AYDVAARRLR GSKAKVNFPD AARAGARPRR ASRRTAQKPP  180
CPPARMTAYS ATAAARAQPE QDSMMVKPEL MESLDMDALV DLTTAVTALP TVMASSFADK  240
MPRVDEDSSE GSGGGAMLGF ADELGFDPFM MFPYESMDSL FAGDAVIQDA RGVDGGMDGV  300
SLWSFDEFPM DSAIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20105165869ATERF1
3gcc_A3e-20105165869ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1023830.0DQ102383.2 Hordeum vulgare root abundant factor (RAF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175335.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A453IY710.0A0A453IY71_AEGTS; Uncharacterized protein
TrEMBLN1R2390.0N1R239_AEGTA; Ethylene-responsive transcription factor 1
STRINGEMT176530.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79873040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-18related to AP2 2