PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17540
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 235aa    MW: 24370.8 Da    PI: 8.4231
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17540genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06208230123
               --S---SGGGGTS--TTTTT-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkF 23 
               +k +lC+ f+++  C +G+rC+F
  EMT17540 208 FKSRLCMSFLAGESCAFGGRCSF 230
               689********66*********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.6E-5205230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MPHPLSLAPT TQQPIQLHRV CRTRCSDEIH ARQYDGRRDK SLPTAAGTGD STRRGAGLGV  60
GAGGVSFLRT IPLSAAGVGA MAQILVVPPA TMGHVQSSPA AELDLSVEGN LSVPVAAVGA  120
RSASSNCGDM CIGGYRPTNS CNTAAARSSG SAAHMGGSEL YLLVKPKIYL LFCFTSDIHE  180
QAVTKKVNNL DLGGEGELGK AMGPESIFKS RLCMSFLAGE SCAFGGRCSF RPCQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR7WCV51e-171R7WCV5_AEGTA; Uncharacterized protein
STRINGEMT175401e-171(Aegilops tauschii)