PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT17222
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 154aa    MW: 16494.9 Da    PI: 10.3997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT17222genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001278100123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               ++C++C + F ++  L  H++ H
  EMT17222  78 FTCNYCQRKFFSSQALGGHQNAH 100
               89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.27E-775105No hitNo description
PROSITE profilePS5015711.32378105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MKSSSVQEAC EDQVSEISSQ AASNNNEASN TSSGPKLALD LSLTVTAAAA AATTTAESST  60
TDSNNGGGQA AREPTRVFTC NYCQRKFFSS QALGGHQNAH RRERTLARRA ELQPVAVARI  120
RANNRTRKST RDHNAHTNSE KTSKKRGEND KLGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751191e-136AK375119.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189445.11e-72zinc finger protein 7-like
TrEMBLN1R3U91e-107N1R3U9_AEGTA; Zinc finger protein 1
STRINGEMT172221e-108(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-12zinc finger protein 2