PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16905
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 410aa    MW: 45376.6 Da    PI: 4.8894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16905genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.7e-19143193155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               s+++G+r+++ +g+W+AeIrdps+    +r++lg+f +aeeAa+a++  +++++g
  EMT16905 143 SQFRGIRQRP-WGKWAAEIRDPSK---GARVWLGTFNSAEEAARAYDVEARRIRG 193
               789*******.**********965...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.13E-31143201No hitNo description
SuperFamilySSF541711.11E-21143202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-31144202IPR001471AP2/ERF domain
SMARTSM003804.3E-35144207IPR001471AP2/ERF domain
PROSITE profilePS5103223.393144201IPR001471AP2/ERF domain
PfamPF008471.6E-11144193IPR001471AP2/ERF domain
PRINTSPR003671.3E-10145156IPR001471AP2/ERF domain
PRINTSPR003671.3E-10167183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MCGGAPLADV KVPTVTRKVT KAALWPEKKK PRHGSNEGRR FTGLGGRRGH GVDDNEEDFE  60
AEMEDFEVES GDSDVELRRT RVDEKDDHNE VVEIKSFAAA KSSLSQVIDY RTKRLCDWFG  120
KDDLSTMTTA GFDGSSAKRK RKSQFRGIRQ RPWGKWAAEI RDPSKGARVW LGTFNSAEEA  180
ARAYDVEARR IRGNKAKVNF PKELIIPQKR RARPAAPKSP KLSVAPEPSV MPSVNNLANP  240
NAFIYPSANF ASNQPLALPD NLSFVHAMNS DGPVEASVMN SYSDQGINSF SFSDLEWDYD  300
TKNPDIPSIA PISTITEGAE SALAQSNAYN SVVIAGGAES ALAQSNTNNL VVPHVMENND  360
VDFEAWTRFL IYDGVDEPID SLLNFDVPRD VIGNMDLWSF DDMPMCGEFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20144201260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20144201563ATERF1
3gcc_A3e-20144201563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196620.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-113ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLN1R3R20.0N1R3R2_AEGTA; Ethylene-responsive transcription factor 1
STRINGEMT169050.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-32ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]