PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT16504
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 271aa    MW: 29604.5 Da    PI: 6.1469
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT16504genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19124174155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
               ++y+G+r++  +g+W+AeIrdp+    r  r++lg+f+tae+Aa+a+++a+ +++g
  EMT16504 124 TQYRGIRQRL-WGKWAAEIRDPR----RaVRVWLGTFDTAEDAARAYDRAAVEFRG 174
               58*****999.**********82....48***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.75E-20124182No hitNo description
SMARTSM003804.9E-37125188IPR001471AP2/ERF domain
PfamPF008476.8E-12125174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31125182IPR001471AP2/ERF domain
PROSITE profilePS5103224.487125182IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21125183IPR016177DNA-binding domain
PRINTSPR003674.4E-11126137IPR001471AP2/ERF domain
PRINTSPR003674.4E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0002679Biological Processrespiratory burst involved in defense response
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009693Biological Processethylene biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0035556Biological Processintracellular signal transduction
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTFGLSPTVD ASQEYMIRFD AHFEFENPST VEPPPPPFAA RAISSEQEHS AMVAALLHVI  60
SGYATPVPDF FFPASKEVCP ACRMDACLGC EFIGAEARPP PAAALGAPKA AAGGPQRRRR  120
NKKTQYRGIR QRLWGKWAAE IRDPRRAVRV WLGTFDTAED AARAYDRAAV EFRGPRAKLN  180
FPFPEQQQQQ LGGSGNATAK SDTCSPSPSP RSPDGEETEE LLWDGLQDLM KLDESELCLL  240
FPVAVNNTLE MFHAPGKRRP GADLGGIMAS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21122183264ATERF1
3gcc_A3e-21122183264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149085.10.0ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-31EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLR7WD020.0R7WD02_AEGTA; Ethylene-responsive transcription factor ERF109
STRINGEMT165040.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-27redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]