PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 261aa    MW: 28460.6 Da    PI: 7.1687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14307genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27.3e-14103182887
               -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
        B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
               s +l++++l ++ +f  +hg+ ++++++l++   +g+sW v l+++ + g+    +++ GW +F+ +n L egD++ F+ + +
  EMT14307 103 SPMLRKCNLNVSVDFQLAHGYAERSKVELRM---RGKSWPVHLKHNPNTGGrprAWFRYGWHQFCVDNSLGEGDTCFFRAICQ 182
               789999*********99**999888766664...67*******99555555567************************97754 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-7142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.32140IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-8146IPR015300DNA-binding pseudobarrel domain
CDDcd100174.39E-7138No hitNo description
PROSITE profilePS508639.37596199IPR003340B3 DNA binding domain
SMARTSM010190.001799188IPR003340B3 DNA binding domain
CDDcd100171.86E-12103178No hitNo description
PfamPF023623.3E-11103180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-19107180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-13107180IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MYLGRGWEQF TRAHDLRLRY FLVFTFDGDA VLTLKVFDVS MCQRHYKHDD DMSTVSSSDG  60
DSGNNNSSVG DSGSNNGSVG DSGSNSSSTA EMDAENGPAS QFSPMLRKCN LNVSVDFQLA  120
HGYAERSKVE LRMRGKSWPV HLKHNPNTGG RPRAWFRYGW HQFCVDNSLG EGDTCFFRAI  180
CQGSASTGGE DHLTQGGGEE AGRQIPGLRR GPPLHASAWL AGVTSFVAMH GHGFASSVPH  240
LLSTQLSSPV IRVLCMYHAV Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749481e-109AK374948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168607.11e-87B3 domain-containing protein Os03g0212300-like
TrEMBLN1QWS70.0N1QWS7_AEGTA; B3 domain-containing protein
STRINGEMT143070.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.12e-08B3 family protein