PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT14137
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 152aa    MW: 16245.4 Da    PI: 12.2543
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT14137genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.2e-174291255
       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a ++++g
  EMT14137 42 TYHGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVATLAIKG 91
              69****998.**********843...6*******************99888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.0E-3042105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3042100IPR001471AP2/ERF domain
PROSITE profilePS5103221.1934299IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-194298IPR016177DNA-binding domain
PfamPF008471.6E-114291IPR001471AP2/ERF domain
PRINTSPR003673.9E-104354IPR001471AP2/ERF domain
CDDcd000181.67E-2543101No hitNo description
PRINTSPR003673.9E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDDIAEPGSP TSPTATSSSS SSSSSSSLAA NKRPRKDSRH PTYHGVRMRS WGKWVSEIRE  60
PRKKSRIWLG TFATAEMAAR AHDVATLAIK GRAARLNSPD LAHLLPRPAS AAPKDVQAAA  120
ILAASASAAR RTGPRPRRRP VRPSRPAPGP EI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1640991272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1084731e-102AK108473.1 Oryza sativa Japonica Group cDNA clone:002-143-E08, full insert sequence.
GenBankAL6630001e-102AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAP0149601e-102AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankAY2582821e-102AY258282.1 Oryza sativa (japonica cultivar-group) CR251 transcription factor gene, complete cds.
GenBankCP0126121e-102CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164576.11e-61ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-41ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLN1QV791e-99N1QV79_AEGTA; Ethylene-responsive transcription factor ERF034
STRINGEMT141371e-100(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.16e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]