PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13776
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 707aa    MW: 79179.4 Da    PI: 6.3564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13776genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-11253278126
               --S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
               ++t lC++++  GtCk+G +CkF+H+
  EMT13776 253 PGTILCSYYMNRGTCKFGTNCKFHHP 278
               5899*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-7252279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.521252280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-7253281IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-9254278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6255281IPR000571Zinc finger, CCCH-type
PfamPF127761.4E-21419512IPR024752Myb/SANT-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MGDSPGSATP SSSMNLANSK AGEIKQLQPE YPRWPGQPDR FYYLKFGSCT SNLEIGEISE  60
PDCTIGASPI DPSSVASATP PSLLNLANSE TGEIKQPEYP RWPVEADCSM SDSSLSSVSI  120
TTPPSEDKSR IKKKSITAPL GDPSSHGSAA PPADSETGEK QPEPEYPLRP GKSDCSYYVK  180
FGSCSPGLQR DNWVGRNSSR ASNSSEYKQQ KNLTFNTNTF QYIFDKACNY NRHEGKTKVK  240
QVKLNFLGLP LRPGTILCSY YMNRGTCKFG TNCKFHHPDP ESEDAILNAP QHTTQGSYQM  300
NLSTKHVQRA LNGHSVPLVT SPTIGTSEII PTQGVNPCPE WSKYQMTKIH KNIRWPRISK  360
TETIFDIQNM LFCFLEIGFI LLFEVIQILL HDISPKKKGQ LHIIFLWQMD ENKQGKSDWD  420
PFTTKVFCDI CTDEVLSGNR PTDHLNGIGY ENLCAKFNEK TKKGYNHKQF ESKWESLKKD  480
YQTWKALMES EDNLGQGTKM NTISASLEWW AKKMEVMPDC GKFCFAPLEN VNLLNIMFED  540
MVDLGSTSPE TNLEVNATIR SEQGPGDGND VGIIDKYVNE QSKEALLQQS SKTEPNLVKL  600
KTNYVHAELN DLVNFEENLS PSNLATSMRI DRVGSNISEI MELVVGAGAE EGSDEHFIAT  660
QLFIRAEHRE MFLTLKTPRG RLRWLKKMCQ LKDPTSSVAD VYSVKLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR7W2U60.0R7W2U6_AEGTA; Zinc finger CCCH domain-containing protein 43
STRINGEMT137760.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4953122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-21C3H family protein