PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT13592
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 431aa    MW: 46077.7 Da    PI: 9.6335
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT13592genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.2e-065173123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C+ Cgk F r  nL+ H r H
  EMT13592 51 FVCEVCGKGFQREQNLQLHRRGH 73
              89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-75073No hitNo description
PROSITE profilePS5015711.7595173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.4E-65173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00275173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM0035531092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-4115148IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.64E-7122147No hitNo description
SMARTSM00355210127147IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MQPLMAAPQP PPPPAAAAPA PKKKRNQPGN PNPDAEVIAL SPRSLMATNR FVCEVCGKGF  60
QREQNLQLHR RGHNLPWKLK QKNPKETRRR VYLCPEPTCV HHDPARALGD LTGIKKHYCR  120
KHGEKKWKCD KCAKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAQ  180
ESARLPPIGA GMYGGPGNMA LGNLSGMTPQ MAGGFPDQSG HHSSASAIDV LNLGGGGGNA  240
GQFEHLMPSS SGSSMFRSQA ATSSPFYMGG GTAQDFGEDD VHRSHGNQGS LLQQGKSPAA  300
FHGLMQLPDQ HQGGGGGNGN NSLLNLGFFS GNGNGSGQDS RLVFQNQYNG SAGIGNNSNG  360
NGENGGIVGV YNLISMSAPA LYFMLVSSLG GAAFKAERTT VSGETRHEAH DRGGRYKQMI  420
QGTHPQCMAH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35123185365Zinc finger protein JACKDAW
5b3h_F7e-35123185365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00142DAPTransfer from AT1G14580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545620.0AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21.
GenBankAK3574010.0AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188927.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_020188928.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_020188929.10.0protein indeterminate-domain 5, chloroplastic-like
RefseqXP_020188931.10.0protein indeterminate-domain 5, chloroplastic-like
TrEMBLN1QY980.0N1QY98_AEGTA; Zinc finger protein MAGPIE
STRINGEMT135920.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-112C2H2-like zinc finger protein