PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT12525
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 340aa    MW: 37031.5 Da    PI: 7.444
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT12525genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.2e-142463221490
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
               + l +p++f  +hg+ +++    +l    g+sW+v+l++    +++ r+ ++ GW +F+ +n+L++g+++ F+  g+ ++
  EMT12525 246 QYLNVPREFSVAHGYAERK---KVLLRMGGESWTVNLKHahnVRGKARTSFRYGWHQFCVDNHLRVGETCFFRALGQGGG 322
               56889********999665...45566799*******9988756666699***********************7665333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-22226335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-15230332IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-5231335IPR003340B3 DNA binding domain
CDDcd100173.87E-13231333No hitNo description
PROSITE profilePS5086311.519233332IPR003340B3 DNA binding domain
PfamPF023622.1E-11246322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAGDVATVF LEMSLGTRLA VSFPAASTTV ADLKRRVSHE HAACFPNYGQ IAVQSVKVEQ  60
GGSWFHLADS MAVRDAFQFH GANETWHLQV DALPHPQHLG QGMATEGHSK DSSAAHSEPS  120
CEMLADQVKV EVGADSEPSC EMLTDQVKVE VGAEEPLSAK GKRSSNGTDP KGSKEAEATS  180
TEQGACERKR LRPRIRVGKT PITKAANSSG SSESEEMDVN TVGVDAPPSQ FVVMLKECHF  240
VTKNGQYLNV PREFSVAHGY AERKKVLLRM GGESWTVNLK HAHNVRGKAR TSFRYGWHQF  300
CVDNHLRVGE TCFFRALGQG GGDRHVLKVE VRRLDGSYAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193RKRLRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3760088e-78AK376008.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3112F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186935.10.0uncharacterized protein LOC109772638
TrEMBLM8BFM20.0M8BFM2_AEGTA; B3 domain-containing protein
STRINGEMT125250.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-07B3 family protein