PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11934
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 399aa    MW: 44588.7 Da    PI: 7.9001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11934genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.001494116323
               ET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
               C+  +Cgk+F +   L++H  +H
  EMT11934  94 CSydNCGKTFVDVAALRKHAHVH 116
               88889**************9887 PP

2zf-C2H220.31.4e-06121145123
               EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
               y+C+   Cgk F ++s LkrH  tH
  EMT11934 121 YVCQepGCGKKFVDSSKLKRHHLTH 145
               99********************999 PP

3zf-C2H212.40.00048195219123
               EEET..TTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
               + Cp   Cgk+F++   Lk Hi+tH
  EMT11934 195 HICPfpACGKRFTSDFKLKCHIKTH 219
               5799999*****************9 PP

4zf-C2H2163.4e-05265290123
               EEET..TTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
               y+Cp   Cgk + + + L+ H++t H
  EMT11934 265 YVCPyeGCGKAYIHGYKLNLHLKTqH 290
               99*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-1288118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01492116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.09492121IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-593117No hitNo description
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-9111158No hitNo description
Gene3DG3DSA:3.30.160.603.5E-13119141IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.129121150IPR007087Zinc finger, C2H2
SMARTSM003559.7E-4121145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-8142167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035583151189IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.06E-9175221No hitNo description
Gene3DG3DSA:3.30.160.602.2E-10181220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.073195219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91195224IPR007087Zinc finger, C2H2
PROSITE patternPS000280197219IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-9258288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-6260289No hitNo description
PROSITE profilePS501579.577265295IPR007087Zinc finger, C2H2
SMARTSM003550.0077265290IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280267290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEYAAAGAGG YYYYPPAQQP QPPPQTLRRR PRPAARWVKQ WIPQDLASPG SKCALFKWVR  60
EDVYKNLKEN GGAGQEPEAQ PRKVEPATEI LFLCSYDNCG KTFVDVAALR KHAHVHGERQ  120
YVCQEPGCGK KFVDSSKLKR HHLTHTGQKD FVCPHPGCEV YFLLRHNFMF ASLQAFSLDF  180
NLRAHLKTHA VENYHICPFP ACGKRFTSDF KLKCHIKTHE KTGSPIAVQH TPPAEKPQST  240
IKPSIQATPK PSAPTPPSFS SERPYVCPYE GCGKAYIHGY KLNLHLKTQH PDHNQENNGR  300
SATPAAGYNY ADGGDIAPNP KRSKTNQGHR APPSNAYNVK VSSRMAVDTS GAKNQWPGKG  360
MYDDDSEETE EDPGGNNVED GWRYGNQNAD DEETEEDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-29842211119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3591910.0AK359191.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091J18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180408.10.0uncharacterized zinc finger protein At4g06634-like
TrEMBLM8BYM80.0M8BYM8_AEGTA; Putative zinc finger protein
STRINGEMT119340.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-93C2H2 family protein