PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11687
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 457aa    MW: 51049.3 Da    PI: 6.0608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11687genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.24.1e-083133521355
       AP2  13 grWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               g WvAeI d+ +   +k+++ g+f   e Aak ++++  ++ g
  EMT11687 313 GTWVAEITDWET---HKKHWAGSFHIVELAAKEYDRWQVQMQG 352
               78*******944...4********************9887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.50.10.102.1E-4622134IPR012341Six-hairpin glycosidase
SuperFamilySSF482081.08E-7222287IPR008928Six-hairpin glycosidase-like
PfamPF007591.8E-3925135IPR001701Glycoside hydrolase family 9
Gene3DG3DSA:1.50.10.107.4E-36135287IPR012341Six-hairpin glycosidase
PROSITE profilePS510329.229299362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-6311353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGLSSVLLLA LLLLPAVASA GHHDYGDALH KSILFFEGQR SGRLPPDQRL RWRRDSGLHD  60
GAAAGVDLTG GYYDAGDNVK FGFPMAFTAT LMSWGLIDFG RSFGPHKEEA RKAVRWATDY  120
FMKATAKRNT VYVQVFKFAD RYRGAYSSSL HAAVCPCYCD FDGYQDELLW AAAWLHKASR  180
RREYRQYIKR NEVVLGASDS INEFGWDNKH AGINVLISKE VLMGKDEYFQ SFRANANNFM  240
CTLLPGISDH PQIQYSPGGL LFKVGGSNMQ HVTSLSFLIL AYSNYLSHAG AHVSCGGGGG  300
RGSTSVSDIG HLGTWVAEIT DWETHKKHWA GSFHIVELAA KEYDRWQVQM QGPPPASTLR  360
EAVVHCNLRR WGRGVTVMLA REDRERITAE AANEEYMADL RRKYPELVEA ERKIFAKVKQ  420
GADGEVIILS DNEEDGDIEG GEKDDSVDDD EDFDIEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ks8_A1e-36231353117Endo-b-1,4-glucanase
1ksc_A1e-36231353117Endo-b-1,4-glucanase
1ksd_A1e-36231353117Endo-b-1,4-glucanase
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in roots. {ECO:0000269|PubMed:17056619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546670.0AK354667.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1009M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693086.11e-144PREDICTED: endoglucanase 8-like
SwissprotQ6Z2J31e-105GUN6_ORYSJ; Endoglucanase 6
TrEMBLM8B4N30.0M8B4N3_AEGTA; Endoglucanase 6
STRINGEMT116870.0(Aegilops tauschii)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yoshida K, et al.
    Carbohydrate-binding module of a rice endo-beta-1,4-glycanase, OsCel9A, expressed in auxin-induced lateral root primordia, is post-translationally truncated.
    Plant Cell Physiol., 2006. 47(11): p. 1555-71
    [PMID:17056619]