PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT11237
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 335aa    MW: 36155.9 Da    PI: 8.1296
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT11237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.21.5e-11102149152
       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52 
               s+++GV+ +k  g+W+A+I         +k ++lg ++t+ +Aaka+++a++ 
  EMT11237 102 SRFRGVTLHK-CGKWEARIGQlM----GKKFVYLGLYDTEMDAAKAYDKAALD 149
               789*******.7******77733....25**********77*********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.295167IPR001471AP2/ERF domain
SMARTSM003801.0E-43273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-83866IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-63867IPR016177DNA-binding domain
SuperFamilySSF541718.5E-16102160IPR016177DNA-binding domain
CDDcd000182.21E-11102160No hitNo description
PfamPF008473.9E-6102150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-15103160IPR001471AP2/ERF domain
PROSITE profilePS5103214.658103160IPR001471AP2/ERF domain
SMARTSM003802.8E-25103166IPR001471AP2/ERF domain
PRINTSPR003673.3E-5104115IPR001471AP2/ERF domain
PRINTSPR003673.3E-5142162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MATAKLPRSL RKPSSLDLAL ISISRLCFLD LQGLREAGGF DTAQAAARAY DQAAIKFRGV  60
EADINFVLDD YKEDIGKMSV LSKEELVQVL RRQGAGFVRG SSRFRGVTLH KCGKWEARIG  120
QLMGKKFVYL GLYDTEMDAA KAYDKAALDC SGEEAVTNFE PKAAVTCDSN LGLQAWDGEP  180
DLELSLGCSG GGDPSMVTGG KTLHTAATPG SRRTSLTFEM PEEEEAAAPW RPGRNRSIWM  240
RPSPTSITPA LRCPDGDHRP TIPRSSMLQM GQIGGAGRAE PHMLGWPTGA GVDRWQPYAA  300
EAAAAASSGF PPAPGLGGVQ RQNHHRPGSR EQLWR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573930.0AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151062.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotB8B0I81e-90AP24_ORYSI; APETALA2-like protein 4
TrEMBLM8B3D30.0M8B3D3_AEGTA; Floral homeotic protein APETALA 2
STRINGEMT112370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118213439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-48AP2 family protein