PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10787
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 564aa    MW: 59281.3 Da    PI: 8.9909
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216.1e-076791226
              -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
              k ++C +f+ t  C++G++C+F+H+
  EMT10787 67 KSKPCVRFFSTAGCRFGSNCHFIHD 91
              7789********************6 PP

2zf-CCCH22.22.5e-07193218227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               kt+lC+ +     Ck Gd+C+FaHg+
  EMT10787 193 KTKLCNKYNTAEGCKWGDKCHFAHGE 218
               89**********************96 PP

3zf-CCCH216.1e-07274298226
               -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
               k ++C +f+ t  C++G++C+F+H+
  EMT10787 274 KSKPCVRFFSTAGCRFGSNCHFIHD 298
               7789********************6 PP

4zf-CCCH22.22.5e-07400425227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               kt+lC+ +     Ck Gd+C+FaHg+
  EMT10787 400 KTKLCNKYNTAEGCKWGDKCHFAHGE 425
               89**********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.136592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5826593IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-76791IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-46791IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-66793IPR000571Zinc finger, CCCH-type
SMARTSM003565.4125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.995125153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5127150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-13188221IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-8190222IPR000571Zinc finger, CCCH-type
SMARTSM003560.063191218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216191219IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4193218IPR000571Zinc finger, CCCH-type
SMARTSM003560.095272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.657272300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6273300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-7274298IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4274298IPR000571Zinc finger, CCCH-type
SMARTSM003564.4332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.667332360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5333359IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6334357IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-13397428IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8397429IPR000571Zinc finger, CCCH-type
SMARTSM003560.063398425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216398426IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4400425IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.65E-10462538IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.8E-11467536IPR004088K Homology domain, type 1
SMARTSM003227.1E-6468538IPR004087K Homology domain
PROSITE profilePS5008412.747469533IPR004088K Homology domain, type 1
PfamPF000134.1E-8471535IPR004088K Homology domain, type 1
CDDcd001051.88E-10471533No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MTYSRGLLLA VGSLEACKLL PAHADLAKHP DDAALWVPGG APGGIGDPEL PRRNRVPEAF  60
EAGAGSKSKP CVRFFSTAGC RFGSNCHFIH DIPGGSQAVA ETSIPSGPAP APKITESESF  120
QTGVGSKLKP CTKISSTSGC PFGEGCHFLH YFPGGHQAVA KMSNLGGQAF AHPQGRMPTG  180
SAVPDGHPTP TVKTKLCNKY NTAEGCKWGD KCHFAHGERE LGKHTFINNS MPPHMGPRPT  240
GHFPHRILYY RNRVMTDSFG VTVPEAFEAG AESKSKPCVR FFSTAGCRFG SNCHFIHDIP  300
GGSQAVAETS IPSGPAPAPK IAESESFQTG VGSKLKPCTK FFSTSGCPFG EGCHFLHYFP  360
GGHQAVAKMS NLGGQAFAHP QGRMPAGSAV PDGPLTPTVK TKLCNKYNTA EGCKWGDKCH  420
FAHGERELGK HMFINKSMPP HMGPRPTGHF GPPAMPSPAM TIPAGFGASS TAKVSVDASL  480
AGGIIGRGRV NTKQISRVTG AKLAIRDHES NETLKNIELE GTFDQINNAS AMLRELFFRI  540
SGGANAPLPS ENLAGGSHRA GGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164489.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-120C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM8B2440.0M8B244_AEGTA; Zinc finger CCCH domain-containing protein 14
STRINGEMT107870.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-34C3H family protein