PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10786
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 277aa    MW: 29315.1 Da    PI: 7.5295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10786genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-077296226
              -S---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
              k ++C +f+ t  C++G++C+F+H+
  EMT10786 72 KSKPCVRFFSTAGCRFGSNCHFIHD 96
              7789********************6 PP

2zf-CCCH30.46.5e-10237261227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               kt+lC +far G C yGd C+FaH++
  EMT10786 237 KTRLCAHFAR-GSCTYGDGCRFAHSE 261
               8*********.*************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5827098IPR000571Zinc finger, CCCH-type
SMARTSM003560.137097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-67298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-77296IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-57296IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.18E-14154225IPR004088K Homology domain, type 1
SMARTSM003223.6E-11156226IPR004087K Homology domain
PROSITE profilePS5008415.997157221IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.4E-15159225IPR004088K Homology domain, type 1
PfamPF000131.2E-13161221IPR004088K Homology domain, type 1
CDDcd001055.99E-16161221No hitNo description
PROSITE profilePS5010316.089235262IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5235261IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-8236266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-14236267IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7237261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAYSRELLLA VGSLEACKLL PADADLAKHP DDAALWVPSQ TLAGGAPGGL GDPELPRRNR  60
EPEEFQAGAG SKSKPCVRFF STAGCRFGSN CHFIHDIPAG SHAVAETSIP SGPAPAPAQD  120
EEELVRLNPT PPPLVMDKPR PTGDHALRAP TPPNAAPAMS KITVDASLAG AVIGRGGATI  180
REISRASGAR LRIRDHERDA GLKNVELEGT PDQIRHASAM VWEHLPVLGG GRYNGVKTRL  240
CAHFARGSCT YGDGCRFAHS ESELRRPAPA PRDPCGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164499.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-59C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A453NMX40.0A0A453NMX4_AEGTS; Uncharacterized protein
STRINGEMT107860.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-49C3H family protein