PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10785
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 205aa    MW: 21392.9 Da    PI: 7.2226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10785genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.6e-09165188327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +lC +far G C yGd C+FaH++
  EMT10785 165 ARLCAHFAR-GSCTYGDGCRFAHSE 188
               58*******.*************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.944119IPR000571Zinc finger, CCCH-type
SuperFamilySSF547918.51E-1679152IPR004088K Homology domain, type 1
SMARTSM003227.6E-1283153IPR004087K Homology domain
PROSITE profilePS5008415.6484148IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.3E-1585151IPR004088K Homology domain, type 1
CDDcd001051.89E-1686148No hitNo description
PfamPF000133.0E-1386148IPR004088K Homology domain, type 1
SMARTSM003563.0E-4162188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488162189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-13163194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-8163193IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-7165188IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MNTAGCRFGE DCLFTHDFPG GYQAVANLGS LGGEAPSQGE KELSEHLPQD NSAPPHIEQG  60
TAGRHAPPLA PNPGKAAPAG FGAPATARIT VDASLAGAVI GRGGATIRQI SRITGARLCI  120
RDHECDAGLK NVELEGTPDQ IRHASAMVWE HLPVPGGGRY NGVKARLCAH FARGSCTYGD  180
GCRFAHSESE LRRPAPAAPR DPCGW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164511.11e-147zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R02e-53C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM8BAY11e-147M8BAY1_AEGTA; Zinc finger CCCH domain-containing protein 14
STRINGEMT107851e-148(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2513945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-36C3H family protein