PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10784
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 338aa    MW: 35599 Da    PI: 8.4108
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10784genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.9e-07100123225
               -S---SGGGGTS--TTTTT-SS-S CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
               k ++C +f+ t  C++Gd+C+F+H
  EMT10784 100 KSKPCIRFFSTAGCRFGDNCRFIH 123
               7789******************** PP

2zf-CCCH18.63.3e-06297322127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt+lC +far G C +Gd C+FaHg+
  EMT10784 297 FKTKLCGHFAR-GCCTHGDGCRFAHGK 322
               69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.998125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.23598126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-699125IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5100123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-7100123IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-14191267IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-14196263IPR004088K Homology domain, type 1
SMARTSM003225.1E-13196266IPR004087K Homology domain
PROSITE profilePS5008415.053197261IPR004088K Homology domain, type 1
CDDcd001051.12E-13199260No hitNo description
PfamPF000131.1E-12199262IPR004088K Homology domain, type 1
SMARTSM003563.0E-4296322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7296327IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.572296323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-11297328IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSSAPPDDGV VPPSVTMPRE GQRIKYSREL LLAVASSDAC KVLPAGVDLS KHPDDVKLWV  60
RAETWAARSV GGAAPGRQGK SELPQRAREP ESFQAGVGSK SKPCIRFFST AGCRFGDNCR  120
FIHYIPGGYV AVEKLGILSG AAPALPPAQG VENPGKHLSM DNSTQPPTEP TPTGDHALQA  180
QTAPDPRKEA VASFGASSTA KISVDASLTG AIIGRGGATI KQISRASGAR LRVRDHDWDA  240
DLKNVELEGT FDQIKNAYDM AMEQLIHVVN HDGGGAPSPA AGANTTSHGG GWQLDSFKTK  300
LCGHFARGCC THGDGCRFAH GKSELRRPVP APRDPGGW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164519.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-71C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM8BVI40.0M8BVI4_AEGTA; Zinc finger CCCH domain-containing protein 14
STRINGEMT107840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2513945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-47C3H family protein