PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT10156
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ERF
Protein Properties Length: 375aa    MW: 41103.8 Da    PI: 6.8814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT10156genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-18113162255
       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +++G+r+++ +g+W+AeIrdps+    +r++lg+f +aeeAa+a++  +++++g
  EMT10156 113 QFRGIRQRP-WGKWAAEIRDPSK---GARVWLGTFNSAEEAARAYDVEARRIRG 162
               69*******.**********965...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-21113171IPR016177DNA-binding domain
CDDcd000183.29E-30113170No hitNo description
Gene3DG3DSA:3.30.730.102.8E-31113171IPR001471AP2/ERF domain
SMARTSM003804.3E-36113177IPR001471AP2/ERF domain
PROSITE profilePS5103223.393113170IPR001471AP2/ERF domain
PfamPF008472.3E-11114162IPR001471AP2/ERF domain
PRINTSPR003671.1E-10114125IPR001471AP2/ERF domain
PRINTSPR003671.1E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MCGGAPLADV KVPTVTRKMT KATLWHEKKK PRHGGSGGRH FTGLGGRRGP GLDDNEEDFE  60
ADSGDSDLEL ERTMVDEKDD DDEVVEIKSF AAVKRSLSQG FDGPSAKRKR KNQFRGIRQR  120
PWGKWAAEIR DPSKGARVWL GTFNSAEEAA RAYDVEARRI RGNKAKVNFP KESTVPQKRR  180
ARPAAPNAPK LSVAQEPSVM PSINNLANPN AFIYPSATFA SNQPLALPDN MSFVPAMNST  240
APVEAFVMNP YSHQGSNSFG CSDLEWDYDT KTPDIPSIAP ISTIAEGAEF ALAQSNAYNS  300
VVITEAAESA LAQSNTHNSV VPHVIENNDV DFEAWTRMSL STWTSGASMT CPCVANFYEG  360
FTHVYRDKRN KTMGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20112170160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-20113170563ATERF1
3gcc_A2e-20113170563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6473570.0HQ647357.1 Hordeum vulgare subsp. vulgare cultivar Morex AP2/EREBP-like protein gene, complete cds.
GenBankHQ6473580.0HQ647358.1 Hordeum vulgare subsp. vulgare cultivar Steptoe AP2/EREBP-like protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195166.10.0ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-102ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLM8B8340.0M8B834_AEGTA; Ethylene-responsive transcription factor 1
STRINGEMT101560.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-34ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]