PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09717
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 407aa    MW: 45246.4 Da    PI: 7.2668
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09717genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05131153123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               y+C+ Cg+ F++   L  H+++H
  EMT09717 131 YSCSFCGREFRSAQALGGHMNVH 153
               99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-6128157No hitNo description
Gene3DG3DSA:3.30.160.603.7E-4129155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002131153IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-6131154IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.217131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048446Biological Processpetal morphogenesis
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDPSFMISSF IAPTQHGIDH QLPGYRTPGA GLDEAVYNKT VTLPVTNWMC EEKIGPGPTR  60
VLQTTKAKYW MITRRKQGDQ KAPAVFSTPH IAVGSGGGTS SATYYESWEE RAFAQDSAGS  120
LGGCIWPPRS YSCSFCGREF RSAQALGGHM NVHRRDRARL KLSGMVEDGG GVDVHGMPLH  180
QGYMIQPLPC PPPRPSAPST EANPNPVRSF LSDPGKSLVD AATARTIWGK QVLAAPLASP  240
SDTQEHGEKD VFLRDAEVRS EQELRAGAGE LKLSLLGRRT RSAFEDDDKE DDEKIVHLCR  300
KRRRIDLEAT EFVLSSSSSE HLQRDDPRDD GDDDNRRVKE VELKIKSLLA YMCEIQCHFS  360
CVWLIFVHLV VSSDCIYVQA FCKNPALLEV ALACNPLRKW QKCFRLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-12126153229superman protein
2l1o_A7e-12126153229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299303RKRRR
2300304KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2494380.0AK249438.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf32c06, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201188.10.0uncharacterized protein LOC109787040
TrEMBLM8AZ150.0M8AZ15_AEGTA; Putative transcriptional regulator RABBIT EARS
STRINGEMT097170.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95942840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.14e-25C2H2 family protein