PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09624
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 1424aa    MW: 158671 Da    PI: 7.4493
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09624genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008312051228122
                EEET..TTTEEESSHHHHHHHHHH CS
   zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                ++C    C++sF+++ +L  H r 
  EMT09624 1205 FPCDieGCDMSFNSQQDLLLHKRD 1228
                789999***************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003559.612051227IPR015880Zinc finger, C2H2-like
SMARTSM003551512281252IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9712281257IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-412301256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012301252IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-1012571282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001612581282IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.40612581287IPR007087Zinc finger, C2H2
PROSITE patternPS00028012601282IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-1012681311No hitNo description
Gene3DG3DSA:3.30.160.603.5E-1012831311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.2412881314IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.17712881319IPR007087Zinc finger, C2H2
PROSITE patternPS00028012901314IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1424 aa     Download sequence    Send to blast
MASFLHSQID KSTAAAPTRI RDLKDLSTPL SQDPKICEIV WGSGEGFDHF GSIVRSLSPA  60
CAGSGEGSDH FGSIVRSLPL HFCKRLFPGL EPVTSWSQGN NFTAAPRLPF INVAFQTLNQ  120
KTTVLSPEVL LSAGVPCCRY FSKADWFRTL ENLLSPSLEL IIVVLAMANL KELTAVDGFN  180
CGEATNIATP LWLQVAKEAA IRRASTNCGP MISHYQLLYK LALSLSQREP KDFHTLPRSS  240
RLRDKKKKDE GDTMVKEKFV GSVIENNNLL SILLDKSSCI IVPETPFPPT SFPTMMKPEL  300
TVKQSLTGGH CSISQQAVHN MSVDVALDKS IVVENMSHSQ SVTEASLSAY NRRKLYETKY  360
GELGTAAFCL SPSKLQSGVT DKDKRGGLLD QGRLPCVQCG ILSFACVAII QPREAAVQFV  420
LSREGISSSA KPGEVSESDG ISNWITKNIE IVPQQGQASE ALSVSLAHVS DRCGQLYSRN  480
NNGSTSALGL LASTYGSSDS EEESNQGKDN QLLETSVSFS STVQRQRSNS HLYEECCEAK  540
TTTSLLKSIE DNSTTITRCG RDTDINHLAK LREQGTTYDQ CSVYVDLAND LTISGVKAYS  600
DTHVTTAKSS IEPDVLTQLK YNNDSCRMHV FCLEHALGTW TQLQEIGGAN VMLLCHPEYP  660
RAESAAKFIA EELGLKPDWK DVAFEEATDD DIRRIQLALH DEDAEPASSD WAVKMGINIY  720
YSAKQSKSPL YSKQIPYNSI IYEAFGQENP DNLTDYGRQR SGVTKKRVAG CWCGKVWMSN  780
QVHPFLVREH EEHNRAIVCS KVMLGANYHE IVYDEPSLTC NTMVDCSPSK RISRRKGRDS  840
IEKSGARKKR CSANDEAILH CSSLGMNSKT ISDQPRNFDD HDKHEGGKIT EAPSTQQYQQ  900
YTLQSMNMKS SSNKPKDDKG NRNFLDLYDE ANDVDCWFNI DSGDNAAIRH LEDSRQQELG  960
TVKAKSPGKL QGNMRKSSKC KARDDSLNGD KKVQKMNKKS ISRKQKDVEI NTQFREEYEG  1020
DNNWEEVPEG KDHDVKEESR AKTRNGEDDK RNNNSHELHD EDNDMDCWHD IQGGDNATMG  1080
NLDNSPVQRL EAAEVKSGGK LHCCKRKPSK GKAKDDYSNG DERLQMLNIE SISRKQKSDS  1140
QFDEGCDRDN ALNSLLNDVD EATRENCYEV REEEMDGMEV KPRGKVQTGK RKTSRCQAGD  1200
KAAKFPCDIE GCDMSFNSQQ DLLLHKRDIC PVKGCKKKFF CHKYLLQHRK VHMDERPLNC  1260
EWKGCKKTFK WPWARTEHMR VHTGVRPYEC MVPGCGQTFR FVSDFSRHKR KTGHSSENFC  1320
ALAEAGIWNI PKSGRSNYKE TGSLKATWLY NSTCGQIAHN TIAHPGRSNA FARSCESVSN  1380
TTRTRPSLAA IVIAWDIATA FAAKASLTLS FLPARAQSRP PPLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-551202131520133Lysine-specific demethylase REF6
6a58_A3e-551202131520133Lysine-specific demethylase REF6
6a59_A3e-551202131520133Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242248RDKKKKD
2833849RRKGRDSIEKSGARKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201011.10.0lysine-specific demethylase JMJ705-like
TrEMBLM8BS260.0M8BS26_AEGTA; Zinc finger protein 410
STRINGEMT096240.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-101relative of early flowering 6