PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09548
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family G2-like
Protein Properties Length: 363aa    MW: 39405.9 Da    PI: 8.7553
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09548genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.91.1e-333993155
   G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
              kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl
  EMT09548 39 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 93
              79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-323694IPR009057Homeodomain-like
PROSITE profilePS5129412.8013696IPR017930Myb domain
SuperFamilySSF466891.79E-163894IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-233994IPR006447Myb domain, plants
PfamPF002492.7E-84191IPR001005SANT/Myb domain
PfamPF143797.9E-20135190IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MFSSKKATSS SAGAVAVQGG GAPMCVQGDS GLVLTTDPKP RLRWTVELHE RFVDAVAQLG  60
GPDKATPKTI MRVMGVKGLT LYHLKSHLQK FRLGKQPHKD FNDHAVKDAA AAMEMHRNAA  120
SSSGIMGRNM NDRNVHMNEA IRMQMEVQRR LHEQLEVINQ PRIKVQKHLQ MRIEAQGKYM  180
QSILEKAYQT LATGDVAASP TAWYKSLGSH AGVLDVCSIK DIGPASMGFP SLQDLHLYGG  240
GHLDLQQQQQ PLESFFACSD GGGIGSLGKK RSSQYAGGKS PMMWGDDEDG DEDDKGDQLL  300
QMAPPMMDDI DSMYGAKPMM TMSGDSAGSR GFDGGMGSKL ERPSPRRPHM GAQRMGSPSV  360
IYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-183995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-183995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-183995157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-183995157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573630.0AK357363.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1051J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150563.10.0myb family transcription factor APL-like isoform X1
SwissprotQ9SAK52e-93APL_ARATH; Myb family transcription factor APL
TrEMBLA0A453NJG50.0A0A453NJG5_AEGTS; Uncharacterized protein
TrEMBLM8C3070.0M8C307_AEGTA; Myb family transcription factor APL
STRINGEMT095480.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.23e-80G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]