PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09537
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 602aa    MW: 65450.7 Da    PI: 6.9714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09537genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.32.1e-06113133526
               --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               +C+ +   G+C+ G++C++ H+
  EMT09537 113 ECNMYKM-GFCPNGPNCRYKHV 133
               6666666.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9575481IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-55480IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-55581IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-65679IPR000571Zinc finger, CCCH-type
SMARTSM003560.004682108IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59682107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065108135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-4114132IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088218.704211339IPR007275YTH domain
PfamPF041461.4E-10266338IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000278Biological Processmitotic cell cycle
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005737Cellular Componentcytoplasm
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complex
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDDGDGGLSF DFEGGLDTGP AAGGLALSSA DAGATGGGGG GDGAGRGRRG GGGSYRQTVC  60
RHWLRGLCMK GEACGFLHQF DKARMPVCRF FRDYGECREP DCAYKHSYDD VKECNMYKMG  120
FCPNGPNCRY KHVKLPGPPP PVEEVLAKIL QMRSSNFNKF NQHRNNNYNQ QGDRPRPPPG  180
SGLPNQNSTD NASTMQPAAG QQAQTMNQQP QQKQQQVQQQ QKPNTNDQVQ GVPNGSSNQP  240
TRLATPLPQG SSSSLISLGF INLKNQGCAK MTSRIGGYIG GGNWKSANGT AHYGRNFSLQ  300
WLKKTHHLRN PYNDNLPVKI SRDCQELEPF IGEQLASLLY LEPDSELTAM LVAAEAKREE  360
EKAKGVSADE AADNQDIVLF EDNEEEEEEE SEEEEENNGQ ESQGRGRGRG MMWPPQMQMP  420
RGPMMGPRGF PPNMMGDFGG GFGFGMPDPF GMPRGFPPFG GPRFPGDFPR GPMPGMVFPG  480
RPPQPGGMFP MGLEMMMGPG RGPLMGMGGP GRPNRPIGMA PFMPPPPPRP VKRDQRRPGG  540
DNRGDRYETG SDQGSRGHDN NAGNSGADGN RSQSGDRFGR SAFRDDDSES DEEAAPRRSR  600
KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A3e-502663677218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B3e-502663677218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C3e-502663677218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D3e-502663677218030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1530536VKRDQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3655420.0AK365542.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157107.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLM8AYI20.0M8AYI2_AEGTA; Zinc finger CCCH domain-containing protein 45
STRINGEMT095370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428