PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09507
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 993aa    MW: 111590 Da    PI: 4.617
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09507genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH278e-09463485527
               --SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
               +C+ ++  GtC yG++C+F+H+p
  EMT09507 463 NCPSYMSKGTCTYGPSCHFNHPP 485
               7********************96 PP

2zf-CCCH35.61.6e-11523545426
               ---SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
               ++C++++rtG C+yG +C+F+H+
  EMT09507 523 RNCDYYMRTGACRYGKNCHFNHP 545
               79********************9 PP

3zf-CCCH28.72.2e-09722748127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               ++++ C+f++r+G Ck+ + C+++H++
  EMT09507 722 PGRADCPFYMRFGDCKFASACNYHHPK 748
               6899*********************96 PP

4zf-CCCH35.81.3e-11757782227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               ++++C+f ++ G+Ck+G++CkF H++
  EMT09507 757 DEPECPFLMKRGYCKFGAQCKFYHPE 782
               689*********************96 PP

5zf-CCCH21.73.6e-07826852127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++Cr+++++G Cky + C F+H++
  EMT09507 826 PGQPECRYYMQFGKCKYLSACIFHHPK 852
               5789*********************96 PP

6zf-CCCH28.52.7e-09869893327
               S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
               ++ C+f+++ G C++G+ C F H++
  EMT09507 869 MPDCPFYMKAGKCQFGSACEFRHPK 893
               789********************96 PP

7zf-CCCH18.24.6e-06935961127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +++++C +++r G+Ck+  +Ck++H++
  EMT09507 935 PGEPECAHYMRQGYCKFQMNCKYHHPK 961
               5799*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-4458485IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-5458485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192458486IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-7463485IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5464484IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6519546IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601519547IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6522547IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9523545IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4525545IPR000571Zinc finger, CCCH-type
SMARTSM003560.0035721748IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023721749IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-6722748IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4755782IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187755783IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9757782IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5759783IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4761783IPR000571Zinc finger, CCCH-type
SMARTSM003560.012825852IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.422825853IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4827852IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014866894IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-4866893IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7869893IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056934962IPR000571Zinc finger, CCCH-type
SMARTSM003560.022934961IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001709Biological Processcell fate determination
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    Send to blast
MENDDDAVQV QEAAVEQQDA THPRDEDIAV EGQETPEAHQ LGSTENADAL VQVQEEGESA  60
DATAVDDHDK AVEQCTTYHD LGTTMENDVA KDDPEEAEQG VIDQGDAAID DVKDHEVLLL  120
VAVEGTRATT DDIAAVEDQG NNVEQCTTYY DLGTTMKSDD DVDDQQVVEQ GVVDLTMDDY  180
ASVEEQEVVE ERVVDLTMDD DDSVQDHKVL QQGIIDGTDD IAVEKQEKVL EQCSRATKDE  240
YTVKEKEMVV EQGVIDPRYM DLATEDQVKL SIVDDQGTVP MDDIVVKDHD KAVVQYASDA  300
IVTIKDESPV EEHDTVGNQG VIDKNGRTKD DIDVEGHGYV KEQVIVDNWG TSSDATALEG  360
QKNEAEPRIG DEQIAGKDMD GVHAEGNMLE QRTGDKQGAT QSDFTVDKHK DVAERVRHER  420
GAPEDDRAMD RTAYQGTGDW GIVSKEKYKL PARRYPQKPR KLNCPSYMSK GTCTYGPSCH  480
FNHPPQLKSR SDESWRPSER RNHGAAEILE LNRLGLPIRE GARNCDYYMR TGACRYGKNC  540
HFNHPDHVID AQFNPPTGWE DNALQMEKSS DHTLDETSRM KKSSDDATFD DRSHMKKSSD  600
DATLDDRSHL KKPSDGAIVD DTSYSKKSSD HDNSSSSGVL PPSIFRMLLP PQKVLPSTEG  660
KAKKKSDWSS DDSDGCCSAD SSDGPLCKQG EHVDYPERPG RPEYHHPKQS KDKEEVHYPE  720
RPGRADCPFY MRFGDCKFAS ACNYHHPKDK YPAARPDEPE CPFLMKRGYC KFGAQCKFYH  780
PEDSNPTVQS PTDAKRSVTT DEHHPSTRIT LQDYMLPQQP QYPERPGQPE CRYYMQFGKC  840
KYLSACIFHH PKDRLAAHSD QIGPEIHGMP DCPFYMKAGK CQFGSACEFR HPKDIHSTTE  900
EAFGQRTGSG AYDNLSRSDN GVEQQEESIM YPERPGEPEC AHYMRQGYCK FQMNCKYHHP  960
KKHEVIRADH LSKAGTRWLP HECYQRKGVP LVQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692020.0AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.10.0uncharacterized protein LOC109766829
TrEMBLM8AYF30.0M8AYF3_AEGTA; Zinc finger CCCH domain-containing protein 8
STRINGEMT095070.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-40floral homeotic protein (HUA1)