PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT09079
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 296aa    MW: 31871.7 Da    PI: 4.5173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT09079genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002272293323
               ETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
               C+ C+k+F++   L +H +  H
  EMT09079 272 CKSCSKTFNSEGALASHSKAkH 293
               *****************88767 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.471270296IPR007087Zinc finger, C2H2
PROSITE patternPS000280272293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEFWGLEVKP NQSVKVSPDD EHFLHLSQGA LGEVKKDDKA TMFVKIGDQK LAIGTLSTDK  60
FPQIQFDLVF EKEFELSHNS KTSSVFFSGY KDESEEEEEE KIIPALTKEN GKPEAKEQKK  120
QVKIDTAAPS KSKAAAKDVG KSKKDDDSDD DDDSDEDDSE DDSGDDGALI PMEDDSDDSE  180
DGDDSSDDSE DSSDEEEEET PKKPETGKKR AAGSVLKTPV TDKKAKIATP SGQKTGDKKG  240
AVHVATPHPA KKAGKTPATS EKSPKSGGSV ACKSCSKTFN SEGALASHSK AKHEAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6566020.0DQ656602.1 Triticum aestivum histone deacetylase HDAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199042.11e-139histone deacetylase HDT2-like
SwissprotQ9M4U53e-89HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLM8BQL00.0M8BQL0_AEGTA; Histone deacetylase HDT2
STRINGEMT090790.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.29e-28histone deacetylase 3